PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016480019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 272aa MW: 29831.7 Da PI: 10.7496 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 78.7 | 7.1e-25 | 12 | 59 | 8 | 56 |
G2-like 8 peLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 peLH+rFv+aveqL G +kA+P++ilelm+v+gLt+++++SHLQkYR + XP_016480019.1 12 PELHRRFVQAVEQL-GVDKAVPSRILELMGVEGLTRHNIASHLQKYRAH 59 89************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.952 | 1 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 12 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.36E-14 | 12 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-6 | 12 | 57 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.5E-22 | 13 | 59 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MKVTTARKGG FPELHRRFVQ AVEQLGVDKA VPSRILELMG VEGLTRHNIA SHLQKYRAHR 60 KHFLAREAEA EIWSQRKQMY GGAVVVGGGG NREINPWTAA SPTMGFPPMT APPMVPPHFR 120 PLHVWGHPPT DQSMMHMWPK HITPLPPAWA SVVPPHSSPP TDPSFWHSHH QRLLNSLAPG 180 TPCFPSPIAP TRFPVSGIPS PAMIKVVPTG ARQDLPKPPP NFHPSKESID AAIGDVLAKP 240 CLPPFPLGLK PPSIDSVLNE LQRQGINKIP PT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 7e-14 | 12 | 61 | 8 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016480019.1 | 0.0 | PREDICTED: probable transcription factor GLK1 isoform X2 | ||||
Swissprot | Q9SIV3 | 8e-65 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A1S4ATL2 | 0.0 | A0A1S4ATL2_TOBAC; probable transcription factor GLK1 isoform X2 | ||||
STRING | XP_009589600.1 | 1e-151 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-65 | GBF's pro-rich region-interacting factor 1 |