PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016479236.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 250aa MW: 28157.6 Da PI: 6.6778 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.5 | 6.4e-33 | 44 | 97 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt +LH++Fv+ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ XP_016479236.1 44 PRLRWTRDLHRSFVHAVERLGGEDRATPKMVLQLMDVKGLTISHVKSHLQMYRS 97 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.803 | 40 | 100 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-32 | 40 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.73E-16 | 42 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.7E-24 | 44 | 98 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.7E-7 | 45 | 96 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MMKQPLELSE SSSQSFPSLS IENNLKDHSN KSGGVRPYVR SKMPRLRWTR DLHRSFVHAV 60 ERLGGEDRAT PKMVLQLMDV KGLTISHVKS HLQMYRSMKH EQMIQAEAEA ANGSKRNRMD 120 GPEQMNYHHY YYDKALFDAH SSSTVTCSNY ADFASAPTIL PPPWKHMQET MENKMMELEG 180 KSNNCTMFRD FFNGCSVQDT GNGNKVVGEA SSLSNKSPSA EEEDFSSSTM SLEPSTSFDV 240 NNLSLDLTLA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-18 | 45 | 100 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016479236.1 | 0.0 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | A0A1S4ARM6 | 0.0 | A0A1S4ARM6_TOBAC; transcription repressor KAN1-like | ||||
STRING | XP_009803423.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7450 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02060.1 | 5e-34 | G2-like family protein |