PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479216.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 339aa    MW: 36973.8 Da    PI: 6.353
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-10188232554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  XP_016479216.1 188 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 232
                     99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.21E-10181237No hitNo description
SuperFamilySSF474591.07E-15181243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.323183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15185243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7188232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MPTKARKAKT ESFHSISVPQ NPLLTSSRRE KTFFSPEIIS GMATNQPEGY ADDFLEQILA  60
IPSYTGLPPV ADVGTSSETT SFTSASAAAS GLQQPLFPLG LSLDNGRDDV SDAGAYAVKH  120
EREGINIGNL YAGLEHLQSH AVRHAVPPVH HIQPFQGQPT TSTTVTVPHP PAIRPRVRAR  180
RGQATDPHSI AERLRRERIS ERIKALQELV PSCNKTDRAA MLDEILDYVK FLRLQVKVLS  240
MSRLGGASAV AQLVADIPLQ SVEGDSAESR SNQHIWEKWS NVDTEQEVAK LMEEDVGAAM  300
QYLQSKSLCI MPISLAALIY PTQQPDDLSM VKPEPAAPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479216.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227684e-80UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S4ARK60.0A0A1S4ARK6_TOBAC; transcription factor UNE12-like
STRINGXP_009762993.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]