PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016478794.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 280aa MW: 32035.9 Da PI: 6.5129

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016478794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.2	6.7e-29	116	203	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p XP_016478794.1 116 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSP 203 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-26	116	203	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MCTSFSGVFT LCFNFFYVYK QITDAIDATV DFVVDDHIVG EEEEGTVVEV RAVDENAVGG 60 SSSEEALHNV HDVKVDEDLS DREVVPLEES QSLGNSTSDE PYVGQEFESE AAAHAFYNAY 120 ATRVGFIIRV SKLSRSRRDG SAIGRALVCN KEGFRMPDKR EKIVRQRAET RVGCRAMILV 180 RKVSSGKWVV TKFVKEHTHP LSPGKGRRDL IYDQYPNEHD KIRELSQQLA AEKKRSATYK 240 RHLEMIFEHI EEHNQSLSKK IQDIVHNVRE MESRDQHHHR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605656.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_016478794.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	8e-27	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S4AQ33	0.0	A0A1S4AQ33_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_009605656.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-97	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]