PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478397.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 404aa    MW: 45462.3 Da    PI: 8.2876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07234256123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_016478397.1 234 HYCQVCGKGFKRDANLRMHMRAH 256
                     68*******************99 PP
2zf-C2H210.70.0016327350123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     y+C+ C+ k Fs  s+L++H + +
  XP_016478397.1 327 YVCNRCNkKQFSVLSDLRTHEKHC 350
                     9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.72E-6233258No hitNo description
SMARTSM003550.0034234256IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-7234293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653234261IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
SMARTSM0035574289322IPR015880Zinc finger, C2H2-like
SMARTSM0035521327349IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MIEGTTNIPC FPNTNPQNLP LYAPIHHNLD QDQDHMISSS VHVATTSSLY HSHQPNSFLY  60
NLSLLKEKVD QVQSLATMFI STNNQTIVQT SESTSMAIAN MGSLIQEIIT TASSLMFSCQ  120
KISLGSTSTT NNINSSRFLE PSQIKLQDDG HVDPLPQGFY PNETLDHWYE ENYASCSNIE  180
DNKSHSTIIA ISDHSNVQLG KRKFKNEGMQ NISSQENCDI IELDAADLLA KYTHYCQVCG  240
KGFKRDANLR MHMRAHGDEY KSNAALSNPL KNNGNDGIND RLSKLSKKYS CPQEGCRWNK  300
KHAKFQPLKS MICVKNHYKR SHCPKMYVCN RCNKKQFSVL SDLRTHEKHC GDLKWQCSCG  360
TTFSRKDKLM GHATLFVGHT PVINSLAKMG KYEQNNVQLS SITG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755231e-86HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799889.10.0PREDICTED: zinc finger protein STOP1 homolog
RefseqXP_016478397.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT241e-111STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1S4ANS90.0A0A1S4ANS9_TOBAC; zinc finger protein STOP1 homolog
TrEMBLA0A1U7YKX10.0A0A1U7YKX1_NICSY; zinc finger protein STOP1 homolog
STRINGXP_009799889.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-112C2H2 family protein