PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016478334.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 349aa MW: 38417.9 Da PI: 8.861

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016478334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.4e-13	282	327	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq XP_016478334.1 282 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 327 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	276	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-16	279	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.58E-12	280	329	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-14	281	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-10	282	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-13	282	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MDSEFDKNQN MNSGLLRFRS APSSLFENLT DGVIKIENFG SENKGFNLAG LNNQLVSQNS 60 QLPPQYPRQN TSGDVGSMDG GGYRVMGSLG NNNLERQNKL ASNLMRQNTS PPGLFSHLNS 120 QIGYGTLKGS GGGYRMANGA NGDSSPSSSR LKGHFSSSFP SGAPSSLGML SRISEVDNER 180 SITTVLDDDK SGDGNSEAQF YNMGFPFTSW NDSHQLDNEG KLFANANQIE ELGNRPPVLS 240 HHLSLPKTPA EIAAIEKLLH FQDTTIPCKI RAKRGCATHP RSIAERVRRT RISERMRKLQ 300 ELVPNMDKQT NTADMLDLAV EYIKDLQKQY KTLTDHRANC KCSAMQKPL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MDSEFDKNQN MNSGLLRFRS APSSLFENLT DGVIKIENFG SENKGFNLAG LNNQLVSQNS  60
QLPPQYPRQN TSGDVGSMDG GGYRVMGSLG NNNLERQNKL ASNLMRQNTS PPGLFSHLNS  120
QIGYGTLKGS GGGYRMANGA NGDSSPSSSR LKGHFSSSFP SGAPSSLGML SRISEVDNER  180
SITTVLDDDK SGDGNSEAQF YNMGFPFTSW NDSHQLDNEG KLFANANQIE ELGNRPPVLS  240
HHLSLPKTPA EIAAIEKLLH FQDTTIPCKI RAKRGCATHP RSIAERVRRT RISERMRKLQ  300
ELVPNMDKQT NTADMLDLAV EYIKDLQKQY KTLTDHRANC KCSAMQKPL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	1e-64	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016478334.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
Swissprot	Q66GR3	3e-74	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1S4ANU9	0.0	A0A1S4ANU9_TOBAC; transcription factor bHLH130-like isoform X1
STRING	XP_009591238.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-71	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]