PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016477567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 410aa MW: 45258.4 Da PI: 6.801 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.1 | 2e-28 | 145 | 199 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm+v+gLt+++++SHLQkYR + XP_016477567.1 145 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGVEGLTRHNIASHLQKYRAH 199 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.862 | 142 | 201 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 143 | 201 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.72E-19 | 144 | 202 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-26 | 145 | 199 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-9 | 148 | 197 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MLTVSPLSYK TTKNDRDNHM ESFTIGGVDD FPEFGDGNLL ESIDFDDIFL GINVDDDVLP 60 DLEMDSEMLA EFSVSSGDES DRMNSYNTTT PPLHVEEHNF SRNEEVEKVP SDLNQKSEKS 120 KPKSKENDKC KKSSGQSKNP EGKRKVKVDW TPELHRRFVQ AVEQLGVDKA VPSRILELMG 180 VEGLTRHNIA SHLQKYRAHW KHLLAREAEA ASWSQRKQMY GGAAVVGGGG KRDINPWPSA 240 PTMGFPPMTA PPMVPPHFRP LHVWGHPPTD QSMMHMWPKH ITPLPPGWAP VPPHSSPPID 300 PSFWHSHHQR VLNSLAPGTP CFPSPIAPTR FPVQGIPPPA MLKAVPTGAG QNLPKPPSDF 360 HPSKESIDAA IGDVLAKPCL PPPPLGLKPP SIDSVLNELQ RQGINKIPPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-16 | 150 | 201 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016477567.1 | 0.0 | PREDICTED: transcription activator GLK1-like | ||||
Swissprot | Q9SIV3 | 7e-82 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A1S4ALG4 | 0.0 | A0A1S4ALG4_TOBAC; transcription activator GLK1-like | ||||
STRING | XP_009761842.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2532 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-76 | GBF's pro-rich region-interacting factor 1 |