PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016477513.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 667aa MW: 74214.7 Da PI: 9.6104 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4e-07 | 569 | 617 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_016477513.1 569 RPFSVFEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 617 56777799*****************9776668**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 1.52E-7 | 359 | 460 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 14.359 | 563 | 622 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-6 | 567 | 620 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-10 | 568 | 618 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.3E-15 | 569 | 650 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.80E-16 | 569 | 619 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MVLHKRLDYG FNGYQVPPIP RATRSARGRG NIRKKSDGNK MCAFDLLTTV AGKLLLEGES 60 TPNSTNTVKE DEDTSLKENL YNEGIRERGF FISPIVSEAP VVNHCLSKSK DTLSGQASVI 120 TSSDCSEKLD SAERFINCES KNETRNCSTK VEQEASGFRH FSNCTLGAES KKQMKIDLSN 180 DAKIFGSDFP DLWDRKPTNL VVSDNTVKLS LSTDHVPFGS FPVIRNDVKL TNKDDDENYC 240 GCAQPSTRNK AFRPTPRVGN FRMRKLSDVN PKFEDADIET RHVYNRKNDY KSERSQRDFP 300 FKKRKLYYCN SFSDSDGGSS DRICSSPTKD LNRDAAGYSL ASSARAAVGT SISRGARTSS 360 DSHVKLKIKS FRVPELFVEI PENATVGSLK ACTSIIHLNK RTVMEAVTAI LGGGLHIGVV 420 FQGKKVRDDN KTLLQAGISH DDKLDALGFT LEPNPSRASS TLGPESHSRV LPCDTLQPLT 480 RGPPTPTVIC NGIRRGTYNA FSDHPETNLN NFIESDHDSA PSPPDASMEK DAADSRALVP 540 VAAVNAEALA AVPMRKPKRS DTAQRRIRRP FSVFEVEALV QAVEKLGTGR WRDVKMRAFD 600 NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLIAHGYWSQ KQAKQHMKHQ 660 SETRLLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 4e-55 | 555 | 658 | 4 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 304 | QRDFPFKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-100 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792985.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like isoform X1 | ||||
Refseq | XP_009792987.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like isoform X1 | ||||
Refseq | XP_009792988.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like isoform X1 | ||||
Refseq | XP_009792989.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like isoform X1 | ||||
Refseq | XP_009792990.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like isoform X1 | ||||
Refseq | XP_016477513.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like isoform X1 | ||||
Refseq | XP_016477514.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like isoform X1 | ||||
Refseq | XP_016477515.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like isoform X1 | ||||
Refseq | XP_016477516.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like isoform X1 | ||||
TrEMBL | A0A1S4AM57 | 0.0 | A0A1S4AM57_TOBAC; telomere repeat-binding protein 5-like isoform X1 | ||||
TrEMBL | A0A1U7Y173 | 0.0 | A0A1U7Y173_NICSY; telomere repeat-binding protein 5-like isoform X1 | ||||
STRING | XP_009792985.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3076 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-133 | TRF-like 2 |