PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477068.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27293.2 Da    PI: 9.5687
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.8e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgklye+ss
  XP_016477068.1 10 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTGKLYEFSS 59
                    9***********************************************96 PP
2K-box82.69e-28831701198
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++ + +q+e+a L+++++ Lq+++R+llGe+L+ Ls+k+L +Le+qLe slk +R++K+++l+++i+el +k + +++en +L kk+
  XP_016477068.1  83 MSEVKFWQREIASLRQQLHYLQENHRQLLGEELSGLSIKDLTNLENQLEMSLKGVRKQKEQILTDEIRELNQKGNLIHQENIELYKKV 170
                     57789********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.833161IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.26E-43278No hitNo description
SuperFamilySSF554554.58E-33282IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2684170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.94686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIVIQR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TGKLYEFSSN  60
SMRAIIDRYN EMKEEHHNLM SPMSEVKFWQ REIASLRQQL HYLQENHRQL LGEELSGLSI  120
KDLTNLENQL EMSLKGVRKQ KEQILTDEIR ELNQKGNLIH QENIELYKKV NLIRQENTEL  180
KKKVSEQGCG SEPNGGVQAT HAISKGYDVH APISLQLSQP QTQKSVTSTS VMQLGLQLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21176176MEF2C
5f28_B1e-21176176MEF2C
5f28_C1e-21176176MEF2C
5f28_D1e-21176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3705280.0AY370528.1 Petunia x hybrida MADS-box protein 14 (PMADS14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612439.11e-175PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_009612441.11e-175PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_016477068.11e-175PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_016477069.11e-175PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP491e-101MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S4AKD01e-174A0A1S4AKD0_TOBAC; MADS-box transcription factor 23-like isoform X1
STRINGXP_009612439.11e-175(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-98AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]