PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016476690.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 493aa MW: 55504.8 Da PI: 8.5482

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016476690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	21	71	7	57
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ q+e Le+++++++yp+++++ eLA++lgLte+qV+ WF+ rR k+k+ XP_016476690.1 21 KTRAQIEGLEKFYKEHKYPTESMKSELAQSLGLTEKQVSGWFCHRRLKDKR 71 6899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-20	3	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-16	7	72	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	12	72	IPR001356	Homeobox domain
SMART	SM00389	8.7E-19	14	76	IPR001356	Homeobox domain
CDD	cd00086	7.24E-16	16	71	No hit	No description
Pfam	PF00046	5.6E-16	20	71	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MHSEDDKGHT EKNKTRIKVI KTRAQIEGLE KFYKEHKYPT ESMKSELAQS LGLTEKQVSG 60 WFCHRRLKDK RLLSREAYAN GRQDRSSGVI QDRGSGFKQD SCGSTKQGDD KNFDHREVES 120 RRLTAREVSA ADVTYEVGTQ YRTESNLMED TPSRSSSSLR DACFSQNVES FDMATSRYLS 180 CNVPTDLKSV KPRTGPSGYL KVKGQVENAA ITAVKRQLGS LYRQDGPPLG VEFDPLPPGA 240 FESSVQNLVD KPEYAGEPVP ALAPDFSKVY KQSNSCIGYG SISKTNSHVP DLEGASFKKS 300 LKSAHPEYYF NQKPGQNSSI HDGDCYYLGR DSSIDMYKGS GREVVLDGRC NYKYMAKHDG 360 AEIRTGTSSS NGFRSPRTGQ VNGEQVKPRF TSCNEMNLKI MEEEDLECKP SNFVLKGSKH 420 RYCPDRALSS KVEKDYIHVD RPAVDENYNL DRVKIPWENE MRAAKRARDE SPNHQEYPRK 480 ASVTQCDPRQ IIG

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MHSEDDKGHT EKNKTRIKVI KTRAQIEGLE KFYKEHKYPT ESMKSELAQS LGLTEKQVSG  60
WFCHRRLKDK RLLSREAYAN GRQDRSSGVI QDRGSGFKQD SCGSTKQGDD KNFDHREVES  120
RRLTAREVSA ADVTYEVGTQ YRTESNLMED TPSRSSSSLR DACFSQNVES FDMATSRYLS  180
CNVPTDLKSV KPRTGPSGYL KVKGQVENAA ITAVKRQLGS LYRQDGPPLG VEFDPLPPGA  240
FESSVQNLVD KPEYAGEPVP ALAPDFSKVY KQSNSCIGYG SISKTNSHVP DLEGASFKKS  300
LKSAHPEYYF NQKPGQNSSI HDGDCYYLGR DSSIDMYKGS GREVVLDGRC NYKYMAKHDG  360
AEIRTGTSSS NGFRSPRTGQ VNGEQVKPRF TSCNEMNLKI MEEEDLECKP SNFVLKGSKH  420
RYCPDRALSS KVEKDYIHVD RPAVDENYNL DRVKIPWENE MRAAKRARDE SPNHQEYPRK  480
ASVTQCDPRQ IIG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009603793.1	0.0	PREDICTED: uncharacterized protein LOC104098696
Refseq	XP_009603794.1	0.0	PREDICTED: uncharacterized protein LOC104098696
Refseq	XP_018627140.1	0.0	PREDICTED: uncharacterized protein LOC104098696
TrEMBL	A0A1S4AJ08	0.0	A0A1S4AJ08_TOBAC; uncharacterized protein LOC107798231
STRING	XP_009603793.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	5e-70	HB-other family protein