PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016476643.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 184aa MW: 21327.6 Da PI: 10.6768 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.6 | 4.4e-13 | 55 | 82 | 29 | 56 |
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 +++eLA+kl+L+ rqV vWFqNrRa+ k XP_016476643.1 55 QKQELAAKLKLKPRQVEVWFQNRRARTK 82 89************************98 PP | |||||||
2 | HD-ZIP_I/II | 87.9 | 1.3e-28 | 54 | 116 | 27 | 89 |
HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eLr+ XP_016476643.1 54 GQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCQSLNDENSRLKKELQELRS 116 69***********************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 9.5E-4 | 29 | 88 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 53 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.58E-10 | 54 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-10 | 55 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.29E-7 | 55 | 85 | No hit | No description |
PROSITE profile | PS50071 | 12.325 | 55 | 84 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.3E-17 | 84 | 127 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.8E-10 | 84 | 116 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MLGHVAVQKR DTRNPRRGHG QRPKATVSNN AHKGVINALR LITFNREYSM ALRGQKQELA 60 AKLKLKPRQV EVWFQNRRAR TKLKQTEVDC EFLKKWCQSL NDENSRLKKE LQELRSIKID 120 QWASPFHLQL PKIRTIALCP SCQKTENIKS EQKHCDLDCG NRKVANDAMS KEANSETILV 180 NEKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | RRARTKLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 2e-40 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016476643.1 | 1e-135 | PREDICTED: homeobox-leucine zipper protein HOX1-like | ||||
TrEMBL | A0A1S4AJP6 | 1e-133 | A0A1S4AJP6_TOBAC; homeobox-leucine zipper protein HOX1-like | ||||
STRING | XP_009630679.1 | 4e-91 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 8e-33 | HD-ZIP family protein |