PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016476085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GeBP | ||||||||
Protein Properties | Length: 196aa MW: 23070.6 Da PI: 9.649 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 45 | 2.9e-14 | 3 | 62 | 36 | 97 |
DUF573 36 afyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 fy f+ +++++kv + + +K+rrLK+K + +k +g++p f+++hd ifelskk+Wg XP_016476085.1 3 SFYYFIAEKLQVKVDRFRMNDKVRRLKRKLFANLEK--KGQNPIFTSPHDYLIFELSKKLWG 62 79********************************99..9**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.8E-11 | 2 | 62 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MYSFYYFIAE KLQVKVDRFR MNDKVRRLKR KLFANLEKKG QNPIFTSPHD YLIFELSKKL 60 WGDDYLVYEY SKKIYGGKIS GGSINRLVKN VNNVRDQVNN TFAKLKDVEK EIVVKEVAAN 120 GEIDDEDQLN FQSKYPHLAA TFNVMKKTMS LVDSDKMRDL EEELKKLQEK ETDLKIKRLD 180 LIRENCELVA EVTRGK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800473.1 | 1e-141 | PREDICTED: uncharacterized protein LOC104246363 | ||||
Refseq | XP_016476085.1 | 1e-141 | PREDICTED: uncharacterized protein LOC107797691 | ||||
TrEMBL | A0A1S4AHA4 | 1e-139 | A0A1S4AHA4_TOBAC; uncharacterized protein LOC107797691 | ||||
TrEMBL | A0A1U7YBH2 | 1e-139 | A0A1U7YBH2_NICSY; uncharacterized protein LOC104246363 | ||||
STRING | XP_009800473.1 | 1e-140 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2369 | 20 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 3e-07 | DNA-binding storekeeper protein-related transcriptional regulator |