PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475710.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 303aa    MW: 34967.2 Da    PI: 9.771
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1685174198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k +++s+v++  +l+lp+ f++ h   ++ ++t+tl des ++++ k+  ++++    l++GW++F  a++L egD++vF+l +  +  l+v 
  XP_016475710.1  85 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLVFQLFRFCR--LKVY 171
                     89*********************8884..35678****************555555....9**********************865233..4777 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_016475710.1 172 IVR 174
                     766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-1977176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2278176IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-2483174No hitNo description
SMARTSM010193.2E-1985176IPR003340B3 DNA binding domain
PROSITE profilePS5086312.05585176IPR003340B3 DNA binding domain
PfamPF023621.2E-1485175IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MYLYLTFIFV YGQIKKTGPQ VMKDMSLGLQ GTHKQVFCKK SKKRRSCKKK MAMMQNLYGR  60
FDLASSAKYR AEEVQSRLST KYPSFMKPMI RSNVTAGFWL SLPRFFCQLH LPRHDTTVTL  120
VDESQEEYKT KYLAERNGLS GGWRGFSLAH NLVEGDVLVF QLFRFCRLKV YIVRANYLAE  180
VDAALVLLHL DAHQKQIDPV HQMQDNRSTK QAGIKRQRFS SQQEEDDYSA EENMLHKHSH  240
PRITFKDLDL PSKAAGLTYE TLSIVDAVKA SKINDPSSWN TRPTELEQLE IRSFSCGYSI  300
EPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349RRSCKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755132e-62HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475710.10.0PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
TrEMBLA0A1S4AG780.0A0A1S4AG78_TOBAC; B3 domain-containing protein At5g42700-like isoform X1
STRINGXP_009778967.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-43B3 family protein