PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475637.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-PHD
Protein Properties Length: 701aa    MW: 79558.7 Da    PI: 7.7324
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.81.8e-13480524953
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     ++ +eeL ++F++n  ps+e+re L+k+lgL+ ++V  WF+N R+
  XP_016475637.1 480 PDAVEELRRAFAENELPSKEMRENLSKQLGLESEKVNKWFKNARY 524
                     6889***************************************97 PP
2PHD34.83.7e-12208263151
                     SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C+ +++  +++++lCd +C+ +fH+kCl+++l++e++p +   w+C+ Ck+k
  XP_016475637.1 208 ICAKCKLQEAfpDNDIILCDgTCNCAFHQKCLDPPLSTENIPPDdeGWFCKFCKCK 263
                     588898844445********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.32E-14200266IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.6E-11204264IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.211206263IPR019787Zinc finger, PHD-finger
SMARTSM002492.5E-9208261IPR001965Zinc finger, PHD-type
PfamPF006283.0E-9208263IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590209260IPR019786Zinc finger, PHD-type, conserved site
CDDcd155044.37E-29209260No hitNo description
Gene3DG3DSA:1.10.10.602.1E-15456523IPR009057Homeodomain-like
PROSITE profilePS5007113.475469529IPR001356Homeobox domain
SMARTSM003891.2E-11471533IPR001356Homeobox domain
SuperFamilySSF466896.84E-12472537IPR009057Homeodomain-like
CDDcd000861.70E-10472532No hitNo description
PfamPF000465.9E-11480524IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MAGKTNKDMH KTVANLSQVK DALRRLDKKR SKLKSKSHGR AARASSSKRT VAGEGKRKEI  60
PQKAKSSKKQ SKLSCRGEEL QACNSKVNLK HENVDTGSEK LKRRRRKKRK HNADPDDVSR  120
LQRRTRYLLI KMKLEQNLID AYSAEGWKGQ SREKIRPERE LQRAKKQILK CKLGIREIVH  180
RLDLLSSPGQ IEDSAIAPDG SVHHEHIICA KCKLQEAFPD NDIILCDGTC NCAFHQKCLD  240
PPLSTENIPP DDEGWFCKFC KCKMEIIDAT NAHIGTHFAM DSNWEDIFKE EALLPEGGES  300
LLCPEQDWPS DDSEDDDYDP EKIAYSHSST DSFESGSSSE ASSASMLGSL EDELLALTGK  360
PEDGSSGKDY LSEQIAGLDY EEMTDFEVLS GPRQRKAVDY IKLNDEMFGK HAPAIEQNSE  420
DEDWGPGKRK RRRKESESDA ASTLITLLES EKNCPEKRAD DEEKESFDKP AKRAIFRIPP  480
DAVEELRRAF AENELPSKEM RENLSKQLGL ESEKVNKWFK NARYMALKAR KQVESAEPCQ  540
VTSPTTSEGC VYETVKDKPA DQISSRDEEE NAAHACNLER SPNEETANLM ISTSKKKHGK  600
KAVKPSIDKL ETTVEFGDDV SLKLLRERAK KERRKLNSKE RERIQEAEAE MQKLCGIKDK  660
IARLQDILLR LPNRRYRRAD ASRVDESSVI FVPVAELQEK R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107LKRRRRKK
2100109LKRRRRKKRK
3101109KRRRRKKRK
4103108RRRKKR
5103109RRRKKRK
6427432KRKRRR
7427433KRKRRRK
8428432RKRRR
9428434RKRRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-126HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-126HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795782.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
RefseqXP_009795783.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
RefseqXP_016475636.10.0PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
RefseqXP_016475637.10.0PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
SwissprotP487851e-147PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A1S4AG310.0A0A1S4AG31_TOBAC; pathogenesis-related homeodomain protein-like isoform X1
TrEMBLA0A1U7XXY50.0A0A1U7XXY5_NICSY; pathogenesis-related homeodomain protein isoform X1
STRINGXP_009795782.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.24e-98pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]