PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475372.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 491aa    MW: 53604.5 Da    PI: 6.9879
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475372.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31148205260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  XP_016475372.1 148 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 205
                     8****************************************.***************85 PP
2WRKY106.51.3e-33312370159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_016475372.1 312 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 370
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-26138206IPR003657WRKY domain
PROSITE profilePS5081122.435142206IPR003657WRKY domain
SuperFamilySSF1182901.83E-24144206IPR003657WRKY domain
SMARTSM007743.4E-33147205IPR003657WRKY domain
PfamPF031067.1E-24148204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37297372IPR003657WRKY domain
SuperFamilySSF1182901.7E-29304372IPR003657WRKY domain
PROSITE profilePS5081138.825307372IPR003657WRKY domain
SMARTSM007743.1E-39312371IPR003657WRKY domain
PfamPF031062.8E-26313370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MQGSSGSAAF SFMRSCSSGN AYGETTGEFE FKFAIGSSST SGSLAKEAAT FAGLNQQQSE  60
PLNQIQDRCL SQSLAPSALV KCEMPNSKEV SQPAPVSLDA SSFSTAAADP AAIDNEEKSQ  120
RGHSNPSSQG LHADNRDVSS ITAERSSDDG YNWRKYGQKL VKGSEFPRSY YKCTYPNCEV  180
KKIFERSPEG QITEIVYKGS HDHPKPQLSR RFTPGALMSI QEDKFFVEDK FNANAQTSKI  240
EPISTPVSPQ QVDADGPEGA VSQMQGTNDD MDEDDPFVKR RKMDGAVDIT PVIKPIREPR  300
VVVQTVSEVD ILDDGYRWRK YGQKVVRGNP NPRSYYKCTN AGCPVRKHVE RASHDPKAVI  360
TTYEGKHNHD VPAARSNNHE MAGSTPVTGG SRIRAEETYS INLDLGVGFG YGVENGNNRQ  420
LHTVHNQVQV SRSGMMVVQP AAIAARYGIV NGGMSRFGPI DNHVQGHGFE TLPLQPSTQF  480
PQNYGKILLG P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-38148373878Probable WRKY transcription factor 4
2lex_A6e-38148373878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111290.0AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475372.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-119WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1S4AFC40.0A0A1S4AFC4_TOBAC; probable WRKY transcription factor 20
STRINGXP_009790875.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-122WRKY family protein