PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475153.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 611aa    MW: 69116.7 Da    PI: 5.1868
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.64.8e-22208272155
         G2-like   1 kprlrWtpeLHerFveaveqLGG..........sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++Wtp++H++F++a++qLG           +ekA+Pk+i+e+m+  gLt+ehv+SHLQkYR+
  XP_016475153.1 208 KRRVVWTPKMHQNFLQAIQQLGHesntfalplfPEKAVPKKIVEIMNETGLTREHVASHLQKYRM 272
                     689******************853333333333589****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.13E-725153IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-925156No hitNo description
Gene3DG3DSA:1.10.10.608.5E-24206276IPR009057Homeodomain-like
SuperFamilySSF466898.87E-15207276IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-21208272IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MDIHGFTANS LGESTPYSSD IGTKRTCILL VLDDITCHNI VSDMLHNQTY EGKTMDTLNA  60
IWERKNIFNL VLTNIHRLNT NGVDILQIIK NKLNLPTILM SPDDTRYENQ VQDCSVAAYV  120
VNVSDTNEMN KLWQMALEKE KARKAAVNQE ENYDNATRLP QNVTETSTEN TSYADNDAAI  180
RAHDVKGKRK AYSDRSEENG ENRDIEKKRR VVWTPKMHQN FLQAIQQLGH ESNTFALPLF  240
PEKAVPKKIV EIMNETGLTR EHVASHLQKY RMCLKRAQES SATSIYDQIL TNDAKEKCFQ  300
VQPYLSSLNF NATQGYSCSA QQPFQTHFQQ GTGGMNSRQP QMVSFPNMVS FQQQNDFLDF  360
ANSRQPEYHS GQIGQQSTFL PRVAHNSNFR VFSDKRKNML FSIQSGKANQ PTNSNSRLDF  420
IGFRLSNDGK SVNFGQKGSS SAVISNNTAY SGLCSSMSED YIHKQQPSPP FLEIPDENTL  480
IQCSSAPPEN FTIFNHPSNS ISEQQRLLLF DNAANTISCQ SQEMHVSFIP QEQLSAQQSS  540
GDLEDYSAIL FGDEVSVPPL ENSVNYDSRQ QEYSVPELPQ EFNSLGNEID IKSLLETTEN  600
RSSQLFWEEG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-14206276362ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187209KRKAYSDRSEENGENRDIEKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475153.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A1S4AFB30.0A0A1S4AFB3_TOBAC; two-component response regulator ARR12-like
STRINGXP_009598455.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36591620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.22e-31response regulator 1