PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474675.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 560aa    MW: 62103.2 Da    PI: 6.7581
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474675.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.33.1e-27315368155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQk+R+
  XP_016474675.1 315 KMKVDWTPELHKKFVKAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKFRM 368
                     5689*****************.********************************8 PP
2Response_reg30.81.4e-11201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealka 92 
                     vl+ d++ + ++ +r+ le+ +y +v ++ d  ea   +  k   ++l ++ +   +   Gl++l+  +     lp i+v++  + +++ +++ +
  XP_016474675.1  20 VLLLDKDCNSASEMRSRLEQMNY-IVYVFCDENEAFSAISSKSevFHLAIVEVTAGNnDGGLKFLEIVKD----LPTIMVSSIHSISTMMKCIAL 109
                     79999******************.***************777778************6677888877766....88*****9999********** PP

                     TESEEEESS--HHHHHH CS
    Response_reg  93 GakdflsKpfdpeelvk 109
                     Ga +fl Kp + ++l++
  XP_016474675.1 110 GAVEFLQKPLSDDKLRN 126
                     **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.0E-1516139No hitNo description
SMARTSM004484.3E-818128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011022.55419132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.29E-921131No hitNo description
PROSITE profilePS5129414.186312371IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-26313372IPR009057Homeodomain-like
SuperFamilySSF466899.86E-18313371IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24315369IPR006447Myb domain, plants
PfamPF002493.9E-7318366IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MVCTENELLG WNDFPKGLRV LLLDKDCNSA SEMRSRLEQM NYIVYVFCDE NEAFSAISSK  60
SEVFHLAIVE VTAGNNDGGL KFLEIVKDLP TIMVSSIHSI STMMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKAFNSGG KNVSESLKPV KESLLSMLEL QPVKSEADNE NSNGVLTTVV  180
ENQKELPPYC DKYPAPSTPQ QKQGVRSVDD GDFQDHTILS TEQDSGVNEG DTKSVETTCC  240
DSVAETTVLA DSPGRLGEAI TKEEHDFAAD QKMEDHIATC SQNNDCPGNS STHSADSSKA  300
SGLHRSSGTK ANKKKMKVDW TPELHKKFVK AVEQLGIDQA IPSRILELMK VEGLTRHNVA  360
SHLQKFRMQR RQILPKEDEK RWPRPQPRDS VQRSYYPHKA VMAFPTYHSN HAPASGQFYP  420
AWVPPGNYPN GAHMWGSPYY PGWRPSETWH RTPHPGLCAD VWGCPVTPPS FGSCPPYPQN  480
ASGLHRAAGI QNRYSILEKS LDLQPAEEVI DKVVKEAINK PWLPLPLGLK PPSTESVLDA  540
LSKQGISTVP PRITGSLRPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-17313373363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-133HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771721.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009771722.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009771723.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009771724.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009771725.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009771726.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016474672.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016474673.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016474674.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016474675.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016474676.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016474677.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA431e-131APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1S4ADE00.0A0A1S4ADE0_TOBAC; two-component response regulator-like APRR2
TrEMBLA0A1U7VV460.0A0A1U7VV46_NICSY; two-component response regulator-like APRR2
STRINGXP_009771721.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-133ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]