PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016474485.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 514aa MW: 58472.7 Da PI: 7.7134

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016474485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.1e-18	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+e+Le+l+e+++yp+ e++++LA+ gLte+q++ WF+ rR k+k+ XP_016474485.1 20 KKRIIKTRAQVEALEKLYEEHKYPTDEMKADLAETSGLTEKQISGWFCHRRLKDKR 75 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-20	6	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.07E-16	12	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	16	76	IPR001356	Homeobox domain
SMART	SM00389	1.3E-18	18	80	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-15	20	75	IPR001356	Homeobox domain
CDD	cd00086	1.54E-15	20	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MEDLCEVHSE DDKGHHEKNK KRIIKTRAQV EALEKLYEEH KYPTDEMKAD LAETSGLTEK 60 QISGWFCHRR LKDKRLSKGE IYANGRQDRS SGVIQDHGSG FRQDSCGSTK QADDKRFDHR 120 EVESRRLTGP EFSTAEVTYE VGTHFRGKSN RMDDASSRSS SSLRNECFSQ NAESYDIATS 180 RYISQNLPTD FKGVKPKNGP SGYLKVKGQV ENAAITTVKR QLGRHYRLDG PALGVEFDPL 240 PPGAFESAVP NPVNDPCYAT EPVPDCSPDM SNVYRRSNGH RSNSKSNSHD SDLDGLRFKR 300 KTNSALPEYH FNLKPKPNSS EHNEYPKWNS SLDMYEGPAR KIAADSRDSC KFMLKHGRAE 360 IRASTGSSNG LRSPYFGKVN GEQLKPRFSS HSEVSLKAVE KEHFDCKPSD YKGINYHNFE 420 GKELPKIVEK DHISGKRTAV DENHDLVRVK VPRHNETRVV HRPMDEVPDH QEYLRRAPVV 480 EIPLQTNHRI RTAAEMRRSF SEDDETEETS SFED

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MEDLCEVHSE DDKGHHEKNK KRIIKTRAQV EALEKLYEEH KYPTDEMKAD LAETSGLTEK  60
QISGWFCHRR LKDKRLSKGE IYANGRQDRS SGVIQDHGSG FRQDSCGSTK QADDKRFDHR  120
EVESRRLTGP EFSTAEVTYE VGTHFRGKSN RMDDASSRSS SSLRNECFSQ NAESYDIATS  180
RYISQNLPTD FKGVKPKNGP SGYLKVKGQV ENAAITTVKR QLGRHYRLDG PALGVEFDPL  240
PPGAFESAVP NPVNDPCYAT EPVPDCSPDM SNVYRRSNGH RSNSKSNSHD SDLDGLRFKR  300
KTNSALPEYH FNLKPKPNSS EHNEYPKWNS SLDMYEGPAR KIAADSRDSC KFMLKHGRAE  360
IRASTGSSNG LRSPYFGKVN GEQLKPRFSS HSEVSLKAVE KEHFDCKPSD YKGINYHNFE  420
GKELPKIVEK DHISGKRTAV DENHDLVRVK VPRHNETRVV HRPMDEVPDH QEYLRRAPVV  480
EIPLQTNHRI RTAAEMRRSF SEDDETEETS SFED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630181.1	0.0	PREDICTED: uncharacterized protein LOC104120160 isoform X1
Refseq	XP_016474485.1	0.0	PREDICTED: uncharacterized protein LOC107796248
TrEMBL	A0A1S4ACU0	0.0	A0A1S4ACU0_TOBAC; uncharacterized protein LOC107796248
STRING	XP_009630181.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-69	HB-other family protein