PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474400.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 383aa    MW: 43372.2 Da    PI: 7.6493
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.73.6e-2280139357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  XP_016474400.1  80 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 139
                     7*****************99**************************************97 PP
2Wus_type_Homeobox115.52.6e-3779141365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_016474400.1  79 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 141
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.5E-577144IPR001356Homeobox domain
PfamPF000466.6E-2080139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-980139IPR009057Homeodomain-like
SuperFamilySSF466893.04E-1280145IPR009057Homeodomain-like
CDDcd000862.06E-681141No hitNo description
PROSITE profilePS5007111.25685140IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MWMMGYNDGG DFNMQDSFNG RKLRPLMPRV PHLPTANIST NPTCLRSIHG ENFIALNHHQ  60
LAMSEQNKRD FNTQQLVVSS RWNPTPEQLQ TLEELYRRGT RTPSAEQIQH ITAQLRRYGK  120
IEGKNVFYWF QNHKARERQK RRRQLESAAA AAGGDDQSRS ICNAENTGRK ESGANRTGFE  180
IEQTKNWPSP TNCSTLAEKT VATTKAAGVA ECRIAAERWI PLDEGEQRRS LLLADQRNAT  240
WQMMHLSCSP PTSTTPHHHL MNINSSTASI SNTITTPIIC SSSPSTPRTT MEPKQLFKTK  300
DHLNIFIAPF RTENNKHENI ENNLGDVGQE ESQTLELFPL RSSNDDNNLS EKDEVEISGA  360
DANSNSNFSG SHYQFFEFLP LKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2762530.0JF276253.1 Nicotiana sylvestris STENOFOLIA 1 (STF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587628.10.0PREDICTED: WUSCHEL-related homeobox 1
RefseqXP_016474400.10.0PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBLA0A1S4ACK20.0A0A1S4ACK2_TOBAC; WOX1
STRINGXP_009587628.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-66WUSCHEL related homeobox 1