PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474013.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19574.2 Da    PI: 9.7201
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.33.5e-171561147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+ie++  r+ tfskRr g+ KKA+EL  LC+++v +++fs+tgk +
  XP_016474013.1 15 KKIESEDDRYATFSKRRSGLYKKASELVKLCNVDVGIVLFSPTGKPF 61
                    68******************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.848767IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-22766IPR002100Transcription factor, MADS-box
CDDcd002653.63E-31879No hitNo description
SuperFamilySSF554553.4E-24878IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-16929IPR002100Transcription factor, MADS-box
PfamPF003192.3E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDGKKTRGRQ KIPMKKIESE DDRYATFSKR RSGLYKKASE LVKLCNVDVG IVLFSPTGKP  60
FSFFHPTSEA IIDRFLNPNM QLSESTSLVA THARNKVNQL NNRKKVFDNI KEVASAQSLM  120
LDNMKENGQR YWWESIEQFN ADEVTKFEAW LSTTVFNMNN RLEQLENEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474013.11e-124PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S4ABV11e-123A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009781581.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-31AGAMOUS-like 61