PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016473886.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 322aa    MW: 36250.4 Da    PI: 5.132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016473886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-112482881055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  XP_016473886.1 248 RKRRERINEKLKTLQSLIPNG-----TKVDISTMLEEAVQYVKFLQ 288
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.548238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14238304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13243302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-12247292No hitNo description
PfamPF000107.9E-9248288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEPVASISGE WSFFSGMYLT EEADFMAHLL GNCSLPNELP STYWTGHEST MNMGGAREVP  60
FYSSNDTNNT MYSGGSGSCF PPRSHESYYS SYSRPILMRN DSSITMEYGL VEGQINPIEA  120
DDFLNRDHVS NDSMEYNENM PEAVLDGNGL QLGRRDYEQF PEDKMDSSSE SSKKRSRLHG  180
PGHVPNNKRS AKLETGERDG KNKAVLQRQN SMISCCSEDE SVNVSHELTR KTRASRGSAT  240
DPQSLYARKR RERINEKLKT LQSLIPNGTK VDISTMLEEA VQYVKFLQLQ IKLLSSDDQW  300
MYAPIAYNGM DLGLDLRIGI PK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755225e-45HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473886.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLA0A1S4ABA50.0A0A1S4ABA5_TOBAC; transcription factor bHLH84-like
STRINGXP_009758954.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-53bHLH family protein