PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016473039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 28045.1 Da PI: 7.4057 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.6 | 4.7e-13 | 18 | 94 | 11 | 98 |
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +k+g + +p f+ ++ + + +++ + + +++W vk+ +++ l++GW++F+++++L+ gD++vF ++g++ef v++f XP_016473039.1 18 FKHG-IKIPLGFL-KYlKD--HDHIEHAILIRGSKKWLVKV--NGRH----LEEGWEKFAEDHDLQLGDMLVFGHEGNMEF--EVSIFH 94 4454.89999999.66332..3455667777789*******..6666....999**********************99999..888875 PP | |||||||
2 | B3 | 52.5 | 8.7e-17 | 137 | 222 | 5 | 94 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++++ l++++l +pk+fa ++g+++++ +l+++de+ rsW++ + r +s +++++GW+e + + LkegD ++F+++ + e++++ XP_016473039.1 137 TVRPYCLQNDILNIPKQFAWANGLINKK-CDLIIRDERQRSWNLVV--RSYSTNVYISGGWNEIRDIHCLKEGDRIMFEVVAN-EKKPTW 222 5789999***************988654.59***************..*******************************9875.444554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-17 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-19 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.66 | 7 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.68E-13 | 8 | 93 | No hit | No description |
SMART | SM01019 | 9.2E-12 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-10 | 19 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-15 | 132 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.138 | 133 | 230 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-16 | 133 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.7E-14 | 134 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-13 | 137 | 224 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.56E-10 | 148 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MKVSPNKPHF LKPILPGFKH GIKIPLGFLK YLKDHDHIEH AILIRGSKKW LVKVNGRHLE 60 EGWEKFAEDH DLQLGDMLVF GHEGNMEFEV SIFHSNQCER EYEEEQKVHN VEETSKKFEF 120 KGIDTHKLFS QSRFVCTVRP YCLQNDILNI PKQFAWANGL INKKCDLIIR DERQRSWNLV 180 VRSYSTNVYI SGGWNEIRDI HCLKEGDRIM FEVVANEKKP TWKFHAKSGE DASIIQEVD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016473039.1 | 1e-178 | PREDICTED: B3 domain-containing protein REM8-like | ||||
TrEMBL | A0A1S4A8Y6 | 1e-177 | A0A1S4A8Y6_TOBAC; B3 domain-containing protein REM8-like | ||||
STRING | XP_009612472.1 | 1e-175 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 2e-37 | B3 family protein |