PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016472812.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 543aa MW: 58163 Da PI: 7.3998

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016472812.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.3	1.9e-40	153	256	3	112
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ + XP_016472812.1 153 PPKKQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP-------P 240 56999***************************************************************9997777777777754444.......3 PP TCP 97 skksqksaasalnlak 112 sk++++s +sal+la+ XP_016472812.1 241 SKSAPHSFHSALALAA 256 3333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-38	157	251	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.542	158	212	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MELSDLQNNN TNSTSKQNNT TTATSTTNTA PSQPLHHQHQ HQYQLLSHHF QQQHGRSSVP 60 FMTSISIQPS APPGLNNSAS PTPTAATSAS PSTSSLTPPP QQQQPPHLVD ASLAIATRSD 120 SLIDQNKKSQ SQQQQLAIQQ TQLVQQQQLQ PQPPKKQTKD RHTKVDGRGR RIRMPAACAA 180 RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSTLNISLR SSGSTLSAPP 240 SKSAPHSFHS ALALAAAHHP PHPFEEGFSH MLGFHQNPHL LTANPIAESI QGGGGGGSSG 300 DGGGGQEGTE NYLRKRYRED LFKEEGSSNP QGEVSGGSSS PSNKQFKGNS SQLPKPSQEA 360 VAGPSSNMLR HANMMPATGL WAVAPPPTSG TTGSPFWMLP VTASGSGHTL SAPMASTSGT 420 TTLESQMWPF SMGSSNTMQA PLHFMPRFNI PTNLEFQSGR GNPLQLGSMI MQQQQQQQPS 480 QHLGLGMSES NLGMLAALNA YSRSGLNMNS DHQSHSLEHH QQHQQQHQPQ PADSEEDDPN 540 SSQ

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MELSDLQNNN TNSTSKQNNT TTATSTTNTA PSQPLHHQHQ HQYQLLSHHF QQQHGRSSVP  60
FMTSISIQPS APPGLNNSAS PTPTAATSAS PSTSSLTPPP QQQQPPHLVD ASLAIATRSD  120
SLIDQNKKSQ SQQQQLAIQQ TQLVQQQQLQ PQPPKKQTKD RHTKVDGRGR RIRMPAACAA  180
RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSTLNISLR SSGSTLSAPP  240
SKSAPHSFHS ALALAAAHHP PHPFEEGFSH MLGFHQNPHL LTANPIAESI QGGGGGGSSG  300
DGGGGQEGTE NYLRKRYRED LFKEEGSSNP QGEVSGGSSS PSNKQFKGNS SQLPKPSQEA  360
VAGPSSNMLR HANMMPATGL WAVAPPPTSG TTGSPFWMLP VTASGSGHTL SAPMASTSGT  420
TTLESQMWPF SMGSSNTMQA PLHFMPRFNI PTNLEFQSGR GNPLQLGSMI MQQQQQQQPS  480
QHLGLGMSES NLGMLAALNA YSRSGLNMNS DHQSHSLEHH QQHQQQHQPQ PADSEEDDPN  540
SSQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016472812.1	0.0	PREDICTED: transcription factor TCP8-like
TrEMBL	A0A1S4A845	0.0	A0A1S4A845_TOBAC; transcription factor TCP8-like
STRING	XP_009593013.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-64	TCP family protein