PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016472469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 353aa MW: 39807.1 Da PI: 7.8556 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.2 | 9.1e-06 | 4 | 26 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC+ffa G C G+ C F+H+ XP_016472469.1 4 RVLCKFFAH-GACLKGEHCEFSHD 26 89***6666.*************5 PP | |||||||
2 | zf-CCCH | 23.5 | 9.4e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C yG+rC++ H+ XP_016472469.1 34 VCTYYQK-GACAYGSRCRYEHV 54 5******.***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.089 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-5 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-5 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.958 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.33 | 133 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 8.8E-9 | 194 | 259 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 1.98E-11 | 195 | 264 | No hit | No description |
CDD | cd00162 | 0.00212 | 200 | 259 | No hit | No description |
Pfam | PF00097 | 4.5E-6 | 201 | 257 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.209 | 201 | 258 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 1.1E-6 | 201 | 257 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 225 | 234 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 12.69 | 287 | 316 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.91 | 289 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MSQRVLCKFF AHGACLKGEH CEFSHDWKTS PNNVCTYYQK GACAYGSRCR YEHVKLSRSQ 60 PSAQSSAQPQ QYLLSSSVST NVAPGAGAQS AGIVPGIYTE YSASSKPTWN QNSELHDTLD 120 NDDMIELRSV SPADRSICAF AAAGNCHRGE KCPHIHGDLC PTCGKHCLHP FRPQEREEHI 180 KTCENRQKHI DLLKRSQEIE CSVCLECVLS KSMVAERKFG ILSECDHPFC ISCIRNWRGS 240 SSSGMDVNSA LRACPICRKL SYFIIPSVIW YFTKEEKEKI VDSYKTKLRF IDCKHFDFGS 300 GTCPFGTSCF YRHQYRDGRL EEVVLRHLGS EDGNTVIAKD IRLSDFLSNL EIR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC171732 | 0.0 | AC171732.2 Solanum lycopersicum chromosome 10 clone C10HBa0111D09, complete sequence. | |||
GenBank | AC240228 | 0.0 | AC240228.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-141c17 map 10, complete sequence. | |||
GenBank | AC244579 | 0.0 | AC244579.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g5 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016472469.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69-like | ||||
Swissprot | E0X9N4 | 1e-167 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A1S4A799 | 0.0 | A0A1S4A799_TOBAC; zinc finger CCCH domain-containing protein 69-like | ||||
STRING | XP_009783087.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3386 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-149 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|