PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016472275.1 | ||||||||
Common Name | ERF189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 26149 Da PI: 6.3673 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 106 | 159 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y GV +++ +g + Ae rdps g +r +lg++ tae+Aa a+++a+ k++g XP_016472275.1 106 TRYIGVKRRP-WGTFSAETRDPSRKG-EgARLWLGTYETAEDAALAYDQAAFKIRG 159 589****9*9.**********85533.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.69E-26 | 106 | 169 | No hit | No description |
Pfam | PF00847 | 1.5E-10 | 106 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-18 | 107 | 168 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-26 | 107 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-28 | 107 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.535 | 107 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-8 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-8 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEMNLADETL FFSESHLLES IKQHLLDDSD FSEIFSPMSS SNEILPNSPS SSFSSFDCSF 60 LNWDENFEET LIPTDQNPSH EKCSESEEQT QGPAVVREKN APRDWTRYIG VKRRPWGTFS 120 AETRDPSRKG EGARLWLGTY ETAEDAALAY DQAAFKIRGS RARLNFPHLI GSNMPKPARV 180 TARRSRTRSP EPSSSSSTSS SENVPRKRNI DVINSIAKAK FLCHSLNLQR LA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-24 | 108 | 167 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-23 | 108 | 172 | 6 | 68 | ATERF1 |
3gcc_A | 1e-23 | 108 | 172 | 6 | 68 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB827951 | 0.0 | AB827951.1 Nicotiana tabacum ERF189 mRNA for ethylene response factor 189, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312507.1 | 1e-171 | ethylene-responsive transcription factor 13-like | ||||
Refseq | XP_009625878.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
Swissprot | Q40479 | 4e-36 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A060N185 | 1e-170 | A0A060N185_TOBAC; Ethylene response factor 189 | ||||
STRING | XP_009625878.1 | 1e-171 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-22 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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