PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472259.1
Common NameERF179
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 236aa    MW: 26698.4 Da    PI: 7.7575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1791141255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y GVr+++ +g+++AeIrdp  +g  +r +lg++ t+e+Aa a+++a+ k++g
  XP_016472259.1  91 RYIGVRRRP-WGKFAAEIRDPERRG--ARLWLGTYQTPEDAALAYDQAAFKIRG 141
                     699******.**********84444..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1291141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3091150IPR001471AP2/ERF domain
SMARTSM003802.2E-3491155IPR001471AP2/ERF domain
CDDcd000181.29E-2891151No hitNo description
PROSITE profilePS5103223.27591149IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2291150IPR016177DNA-binding domain
PRINTSPR003679.5E-1292103IPR001471AP2/ERF domain
PRINTSPR003679.5E-12131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNPADNATFS FSDVDFLDSI EHHLLNDSDF SNSFSPMSSS NVATPNSPSS SFGSCLLDEN  60
IEETTILESQ SEPEEGGKAA REENTKQYWR RYIGVRRRPW GKFAAEIRDP ERRGARLWLG  120
TYQTPEDAAL AYDQAAFKIR GSRARLNFPH LIGSNNMPEP TRVTGIRHNS RSLEPSSTSS  180
TTSSENGTKE KKYRGHKFYS QSQIGWSYPR PRDINITIRK EEFSVLFPNA ATLLHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2792155669ATERF1
3gcc_A7e-2792155669ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8281500.0AB828150.1 Nicotiana tabacum ERF179 mRNA for ethylene response factor 179, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312506.11e-176ethylene-responsive transcription factor 14-like
TrEMBLS0BBU21e-174S0BBU2_TOBAC; Ethylene response factor 179
STRINGXP_009609536.11e-137(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-36ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Shoji T,Kajikawa M,Hashimoto T
    Clustered transcription factor genes regulate nicotine biosynthesis in tobacco.
    Plant Cell, 2010. 22(10): p. 3390-409
    [PMID:20959558]