PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016472211.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 693aa MW: 75697.8 Da PI: 7.0919

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016472211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.6e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg XP_016472211.1 280 PCPEFRK-GACQRGDMCEYAHG 300 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	2.49E-15	18	148	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.9E-9	55	128	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-15	59	139	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.65E-13	59	137	No hit	No description
PROSITE profile	PS50297	14.743	59	135	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.042	59	89	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.98	94	129	IPR002110	Ankyrin repeat
SMART	SM00248	0.018	94	126	IPR002110	Ankyrin repeat
SMART	SM00356	2.0E-5	275	301	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.1E-5	280	300	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.568	280	302	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	308	338	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	41	310	333	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MTMNNLTVET VDTFASLLEL AANNDIEAFT RWIERDLSSI HEVGQWYGRQ KGSKQMVLEH 60 RTALMIAATY GSIDVLKLIL SVPDVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA 120 GADPKSKDVN GRCPIDVIVV SPNFLSVKSS LENLLKTDGI RDCELRVPIA TSNSNSPPHS 180 PSRGNRSPSS ASDSNSSPKS AKSNDTPVYS IPEKKEYPID PSLPDIKNNI YSTDEFRMFS 240 FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT DCNRRVCFFA HTQEELRPLY VSTGSAVPSP RGSTAANAMD 360 FAAAMGLIPG SPSSVSVMSP SPFSPPMSPS ANGISSMGWP QQNVPALHLP GSFLHSSRLR 420 SSLNARDIPA ADLNAYPDFD VQRQLLNEFS CLSQRNMSSN SFNCSPRQMS HARANLEDLF 480 SAESSSPRYS DQALAQAGFS PTHKSAVCSQ LQQQQSLLSP INTNFSPRNV DNPLLQASFG 540 VPSSGRMSPR AMEPISPRSP RVSILAQHDK QHQFRSFSSR DLGSNVSAIV GSPADTWGTA 600 MGKPDWAVNT GEFGRLRRSS SFELANNGED PDISWVQSLV KESPPEMMKD KCVPHVSGPT 660 GAVADLGEGP TSSSQIDQSD QLSAWMEQMK LDQ

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MTMNNLTVET VDTFASLLEL AANNDIEAFT RWIERDLSSI HEVGQWYGRQ KGSKQMVLEH  60
RTALMIAATY GSIDVLKLIL SVPDVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA  120
GADPKSKDVN GRCPIDVIVV SPNFLSVKSS LENLLKTDGI RDCELRVPIA TSNSNSPPHS  180
PSRGNRSPSS ASDSNSSPKS AKSNDTPVYS IPEKKEYPID PSLPDIKNNI YSTDEFRMFS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT DCNRRVCFFA HTQEELRPLY VSTGSAVPSP RGSTAANAMD  360
FAAAMGLIPG SPSSVSVMSP SPFSPPMSPS ANGISSMGWP QQNVPALHLP GSFLHSSRLR  420
SSLNARDIPA ADLNAYPDFD VQRQLLNEFS CLSQRNMSSN SFNCSPRQMS HARANLEDLF  480
SAESSSPRYS DQALAQAGFS PTHKSAVCSQ LQQQQSLLSP INTNFSPRNV DNPLLQASFG  540
VPSSGRMSPR AMEPISPRSP RVSILAQHDK QHQFRSFSSR DLGSNVSAIV GSPADTWGTA  600
MGKPDWAVNT GEFGRLRRSS SFELANNGED PDISWVQSLV KESPPEMMKD KCVPHVSGPT  660
GAVADLGEGP TSSSQIDQSD QLSAWMEQMK LDQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804762.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016472211.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1S4A6L8	0.0	A0A1S4A6L8_TOBAC; zinc finger CCCH domain-containing protein 30-like
TrEMBL	A0A1U7YL13	0.0	A0A1U7YL13_NICSY; zinc finger CCCH domain-containing protein 30-like
STRING	XP_009804762.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]