PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016472137.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 287aa MW: 32732.4 Da PI: 5.475

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016472137.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	3.9e-11	178	222	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr +r NR +A+rsR RK++++ eLe+ v +L+ae + L ++ XP_016472137.1 178 KRIKRILANRQSAQRSRVRKLQYVSELERSVSTLQAEVSVLSPRV 222 899*********************************988776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.9E-14	174	238	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.634	176	239	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.25E-11	178	232	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-11	178	230	No hit	No description
Pfam	PF00170	1.1E-9	178	221	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.37E-21	179	229	No hit	No description
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MAQLPPRVPN MTPNWPDFSL QKMDNLSPNA TAANNNPLWA DEFLDFSTKR GSHRRSMSDS 60 IAFLETPMVE ECRRLSSTPG SGGTSTGNEE FERFDDEQQI MSMFNDDEHD NMSCSNPSSP 120 SDYINVNEDN KRMIAGGGDR DQMQQLNEEV QSSCKTTEEP TPTHASIEYS CEKVVDPKRI 180 KRILANRQSA QRSRVRKLQY VSELERSVST LQAEVSVLSP RVAFLDHQRL VLNVDNSALR 240 QRIAALAQDK LFKDAHQEAL KREIERLRQI YYQQNLKQME NGTQSKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	1e-39	HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBank	HG975524	1e-39	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016472137.1	0.0	PREDICTED: basic leucine zipper 61-like, partial
Swissprot	Q9M2K4	1e-103	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A1S4A660	0.0	A0A1S4A660_TOBAC; basic leucine zipper 61-like
STRING	XP_009593639.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1775	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-103	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]