PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016471479.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 29313.1 Da PI: 7.9462 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.3 | 9.3e-30 | 11 | 65 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt++LH+ F +av+qLGG+e+AtPk il++m+++gLt+ hvkSHLQkYR+ XP_016471479.1 11 KERLKWTQQLHDLFEKAVTQLGGPERATPKGILKVMGIEGLTIFHVKSHLQKYRM 65 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.02E-16 | 9 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-27 | 9 | 66 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-23 | 11 | 66 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-8 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-15 | 97 | 141 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGSNRSDCSS KERLKWTQQL HDLFEKAVTQ LGGPERATPK GILKVMGIEG LTIFHVKSHL 60 QKYRMSKFVR EDPVIGKFER RSISEILPNF SATAGAQLNE ALQMHMDARR RLSDHLEVQR 120 NLRMKLEAQG RFLDGIMEER KAHASSCRLS CKSYSYSPLS LPSLCDELSE SNVKELESDS 180 EVDRNEIRSV DPECQARKRS RIDEDVILSH RYNSNVAYSS LTSGPQNHPY SSPHELPWST 240 LATYQSPHMP AFYDSLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-21 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-21 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-21 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-21 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-21 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-21 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-21 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-21 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-21 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-21 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-21 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-21 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799173.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
TrEMBL | A0A1U7Y7T1 | 0.0 | A0A1U7Y7T1_NICSY; protein PHR1-LIKE 1-like | ||||
STRING | XP_009799173.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10101 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-46 | G2-like family protein |