PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470861.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 394aa    MW: 44224.2 Da    PI: 8.2024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12208255254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h e+Er+RR+++N++f  Lr+++P+      ++ +Ka+ L  Av YI++L
  XP_016470861.1 208 QMNHVEAERQRREKLNHRFYMLRSVVPQV-----TRIDKASLLSDAVAYINEL 255
                     689*************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-2712114IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000839.45E-14204259No hitNo description
PROSITE profilePS5088816.615206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17206267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10208255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15209267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-15212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAKTSKIVPQ KEKASSSKPG SNKDVEWFYV LSLAKSYSGN EGVIGKAFTS TASFVWLTGA  60
QLLQFCSCER AKEAQYNGVK TLVCVPISNG VLELGSSDII KEDWTLVQQV KSLFCSVQEN  120
GPMNFLDQNT IYFANFDFVT GMQKDVQESD NSSKKVATTS HASFLDSELS NSDCQLLEYP  180
VQKSRVGSKI RRTYRKRGRK HGVDCDKQMN HVEAERQRRE KLNHRFYMLR SVVPQVTRID  240
KASLLSDAVA YINELKAKVD KLESKLHTNL ELKKKPEMEH NDAVDNQSST NSVDHVSPSP  300
NISTQKNPTL KVEVKMIGPD AMIRVQSEDV NYPSTRLMCA LQDLELHVYH ANISSVNNIV  360
VQDIVIRDVP NKGLKTEDGL RAAILRSLEQ IEDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-22209265763Transcription factor MYC2
5gnj_B4e-22209265763Transcription factor MYC2
5gnj_E4e-22209265763Transcription factor MYC2
5gnj_F4e-22209265763Transcription factor MYC2
5gnj_G4e-22209265763Transcription factor MYC2
5gnj_I4e-22209265763Transcription factor MYC2
5gnj_M4e-22209265763Transcription factor MYC2
5gnj_N4e-22209265763Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-42HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755221e-42HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470861.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1S4A2R20.0A0A1S4A2R2_TOBAC; transcription factor MYC2-like
STRINGXP_009775258.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-60bHLH family protein