PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016469442.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 393aa MW: 45519.2 Da PI: 9.9918 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48 | 2.3e-15 | 16 | 94 | 9 | 99 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k++ l +pk f+ ++ +g ++e + + +++W vkl ++++ l++GW++F++++gL+ gD ++F+++g++ef v++f++ XP_016469442.1 16 PGFKHA-LKIPKGFL-KYlKGHEHE---HAVLRRGSKKWLVKL--NGQR----LEEGWEKFAEEHGLQLGDLLIFRHEGEMEF--EVTIFDS 94 556666.********.564666444...56777899*******..8887....***********************9999999..9999986 PP | |||||||
2 | B3 | 44.2 | 3.4e-14 | 140 | 221 | 5 | 89 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++s+ ++++ ++lp kf++++g+k+++ l+++ e+ rsW++kl + +++++++ W eF +an++k+gD ++F+++ + e XP_016469442.1 140 TVRSYCFSKSYFRLPGKFTKANGLKNKK-CGLIIRGERQRSWNLKL--YTSYSQVYIGGKWGEFRDANDIKVGDRIMFEVVANGE 221 578999****************777544.47999************..66667889***********************887533 PP | |||||||
3 | B3 | 55.8 | 8.2e-18 | 286 | 372 | 5 | 96 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++++l+++ l++p +fa++hg+ ++ t++++d + rsW+++l ++ +++++GW++F+ an LkegD v+F + +++++ +k+ XP_016469442.1 286 TMKPYYLSKHFLRVPSPFARQHGLRDRK-CTIMIRD-EQRSWTFTL--YSCGTVTYIGGGWRDFCIANCLKEGDRVMFGIVA-NGEKPILKF 372 57899999999***********999766.5999999.779******..888888*************************876.555566665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.2E-22 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-20 | 5 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.449 | 7 | 95 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.78E-16 | 8 | 93 | No hit | No description |
SMART | SM01019 | 3.0E-17 | 10 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-11 | 19 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-13 | 134 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.41E-14 | 136 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.771 | 136 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.2E-9 | 136 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-12 | 140 | 222 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.00E-10 | 142 | 215 | No hit | No description |
SuperFamily | SSF101936 | 7.85E-20 | 278 | 372 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-19 | 279 | 372 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.18E-15 | 281 | 374 | No hit | No description |
PROSITE profile | PS50863 | 11.392 | 282 | 375 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-15 | 283 | 376 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-15 | 286 | 373 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MKVRPAKPHF FKPILPGFKH ALKIPKGFLK YLKGHEHEHA VLRRGSKKWL VKLNGQRLEE 60 GWEKFAEEHG LQLGDLLIFR HEGEMEFEVT IFDSSHCDRE YAEYLQDEED AHTVKDPSKK 120 FEIKEAAPQN PIGQSHVVCT VRSYCFSKSY FRLPGKFTKA NGLKNKKCGL IIRGERQRSW 180 NLKLYTSYSQ VYIGGKWGEF RDANDIKVGD RIMFEVVANG ERPIWKFHHL RKNASLQPEG 240 MKTNSDTERV STPEKPKSNT ISSREAVPNV EAAKDMHLGH PHFICTMKPY YLSKHFLRVP 300 SPFARQHGLR DRKCTIMIRD EQRSWTFTLY SCGTVTYIGG GWRDFCIANC LKEGDRVMFG 360 IVANGEKPIL KFHDLRGNAS LQPERFHSRN NRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469442.1 | 0.0 | PREDICTED: B3 domain-containing protein REM10-like isoform X2 | ||||
TrEMBL | A0A1S3ZYE6 | 0.0 | A0A1S3ZYE6_TOBAC; B3 domain-containing protein REM10-like isoform X2 | ||||
STRING | XP_009597618.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 9e-49 | B3 family protein |