PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469073.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 387aa    MW: 42990.4 Da    PI: 8.2512
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08119139526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+++ + G C yG++C+F H+
  XP_016469073.1 119 VCNYWVK-GNCTYGNTCRFLHS 139
                     7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.482550IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.2772551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788114141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7115139IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5116140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-6118139IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-6118139IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.1E-43137381IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.9E-10140204IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.3E-5145184IPR001680WD40 repeat
PfamPF004001.3E-4148184IPR001680WD40 repeat
PROSITE profilePS5008213.282152193IPR001680WD40 repeat
PROSITE profilePS5029421.094152347IPR017986WD40-repeat-containing domain
PRINTSPR003206.0E-7171185IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780171185IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.101.3E-30205381IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.018214251IPR001680WD40 repeat
PROSITE profilePS5008211.912221260IPR001680WD40 repeat
PfamPF004000.027222251IPR001680WD40 repeat
PRINTSPR003206.0E-7238252IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780238252IPR019775WD40 repeat, conserved site
SMARTSM003201.2E-4254291IPR001680WD40 repeat
PfamPF004002.4E-4256290IPR001680WD40 repeat
PRINTSPR003206.0E-7278292IPR020472G-protein beta WD-40 repeat
SMARTSM003200.19295338IPR001680WD40 repeat
SMARTSM003209.9341378IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDMDGSKRIF QRLGPHSQGG DNNSNKQQKV CFHWRAGRCN RFPCPFLHRE LPAPPHQQQQ  60
QQHNGMPSSS SKRPHAFSSD YDNRGSAGGG GMRRNPNFNN TWGRTAAGGG AVVRKMEKVC  120
NYWVKGNCTY GNTCRFLHSW TTGDCFTLLT QLEGHQKVVA GIALPSGSDK LYSGSTDKTV  180
RVWDCQSGQE NCLRLLAGTE DGILAWKYNG STNCFEPAAQ LKEHTHHVVS LVVGANRLYS  240
GSMDNSIRVW NLETMQCLQI LTGHTSVVMS VLCWDQFLLS CSLDQTIKVW AANESGNLEA  300
TYTHQEEKGV LALCGMHDSE AKPVLLCSCN DKTIRVYDLP SFSERGKIFS KEVVRRIEIG  360
PGGLFFTGDE SGQLRVWKWL TESSSTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B7e-19131341114391F-box/WD repeat protein 7
2ovq_B7e-19131341114391F-box/WD repeat protein 7
2ovr_B7e-19131341114391F-box/WD repeat protein 7
5v4b_B7e-19131341114391F-box/WD repeat-containing protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754428e-35HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755158e-35HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469073.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-164C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1S3ZXJ90.0A0A1S3ZXJ9_TOBAC; zinc finger CCCH domain-containing protein 48-like
STRINGXP_009626305.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-165zinc finger WD40 repeat protein 1