PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468474.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 465aa    MW: 52709 Da    PI: 6.7695
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000197396123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    + C+ Cgk Fs+   L  H+++ H
  XP_016468474.1 73 HICSECGKQFSSGKALGGHMSSaH 96
                    68******************9988 PP
2zf-C2H214.50.0001138157221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                      C  Cgk F++k +L  H+r
  XP_016468474.1 138 ICDLCGKNFPSKKSLFGHMR 157
                     5******************8 PP
3zf-C2H2130.00031393413323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cgk+F+++  L  H ++H
  XP_016468474.1 393 CSICGKTFTSHQALGGHRSSH 413
                     **************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.08E-97195No hitNo description
PfamPF139127.2E-107396IPR007087Zinc finger, C2H2
SMARTSM003550.0457396IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.13873101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807596IPR007087Zinc finger, C2H2
SuperFamilySSF576672.08E-9132159No hitNo description
PROSITE profilePS5015710.305137164IPR007087Zinc finger, C2H2
SMARTSM003550.0029137159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.2E-4137159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.9E-7138161IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.201391418IPR007087Zinc finger, C2H2
SMARTSM003550.18391413IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-7393414IPR007087Zinc finger, C2H2
PROSITE patternPS000280393413IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEADNQEENH ELKSTKRSLQ EINRCCEKAV FSGDKSSLKV KIKMPKLEEV VEKEEEKEIN  60
GGQEEEILKK KDHICSECGK QFSSGKALGG HMSSAHVQAN NREESWKNKQ LKVNNYGQSS  120
KRSRILLEEE EDGVKKIICD LCGKNFPSKK SLFGHMRCHP DRDWRGMKPP NNKDNFKNKG  180
VLVFPANNFL DYDDDDDDDN DDYFLNTQEY KELHEIESAR KIESASNINI NINVAPAFPN  240
VDLKDCLKSW AVKDKRGRSA KLSSSISNSD DKELQDAVHQ LIRLVNGVNN INSPKNCHTK  300
TEELEVMCSN SVTPDLPLKD KAKGKRKAYD IEDDYCSGIE SRDCFVMANK KRSMPDQKQQ  360
QKQKTQCNSI SGVCGRSDQK QQIKNVTPGR NMCSICGKTF TSHQALGGHR SSHNKFKMTI  420
ENTIDQETKI KSAAQDDESE INIGNASKVL DFDLNELPDV DDCYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468474.10.0PREDICTED: uncharacterized protein LOC107791009
TrEMBLA0A1S3ZVX30.0A0A1S3ZVX3_TOBAC; uncharacterized protein LOC107791009
STRINGXP_009790343.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-15C2H2 family protein