PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016467525.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 324aa MW: 37986.5 Da PI: 8.6634

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016467525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.1	8.6e-22	55	137	2	86
trihelix 2 WtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++qe+++ i +r e+e++++ +++ k+lWe v++km+erg++rs++qCk+kw+nl +ryk + ++ ++ ++++fd+l+ XP_016467525.1 55 WSNQETRDFIGIRGELEKEFSlaKRSNWKNLWEMVAAKMKERGYRRSAEQCKSKWKNLVNRYKGKESSDPDN----GGQFQFFDELH 137 ******************94345577**********************************99999984....34588999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.782	47	113	IPR017877	Myb-like domain
Pfam	PF13837	8.4E-22	54	139	No hit	No description
CDD	cd12203	7.45E-22	55	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MFGGGDNENL GPFTQRLMFP NLPLHLLPGA SISTATATVA GDDEFPKRDE RVPPWSNQET 60 RDFIGIRGEL EKEFSLAKRS NWKNLWEMVA AKMKERGYRR SAEQCKSKWK NLVNRYKGKE 120 SSDPDNGGQF QFFDELHALF TTSTNNVHQL QLESEAGSQQ AKKRPRRTIR DQSSEDVSED 180 EEGYESDEVK LAKSKVAPKK NIEKEKRPRT KNAEKPSRQP SLGSTNNSGR TVENIQEMLK 240 DFFQQQLRIE MQWRETMEKC AREREVFEQE WRSSMEKLER DRMMIEQAWR EREEQRRMRE 300 ENRAEKRDAL LTTLLNKLIG ENHP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009614205.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
Refseq	XP_016467525.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A1S3ZSY9	0.0	A0A1S3ZSY9_TOBAC; trihelix transcription factor GT-3b-like
STRING	XP_009614205.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10133	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-33	Trihelix family protein