PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016467318.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 565aa    MW: 62828.8 Da    PI: 4.712
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016467318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.93.4e-21222270554
         G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     +Wt eLH++F+eav+qL G+ +  Pk+ilelm+v+gLt+ +v+SHLQk R
  XP_016467318.1 222 EWTLELHAKFLEAVAQL-GEGRCYPKEILELMDVPGLTRMQVASHLQKCR 270
                     7****************.9*****************************98 PP
2Response_reg35.16.9e-13131171106
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     v++vd ++ v   +  +le+++y +v+++  +e a+++l + +  +D++++    p++   +ll +  e +  +  i+v + +++ +a++al++G
  XP_016467318.1  13 VMLVDHDQEVIYEMVDLLESHKY-KVTTVGAAEMAMTMLSKGKerYDVMIINAYSPDLLSTQLLGQAVELD--IISIFVCDDNNPLLAKKALDVG 104
                     89*********************.***************777667************99999988877766..88889999999*********** PP

                     ESEEEESS--HHH CS
    Response_reg  94 akdflsKpfdpee 106
                     a  +l Kp ++e 
  XP_016467318.1 105 AYLYLKKPLQEEM 117
                     ********77654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.99E-1310136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-1310133No hitNo description
SMARTSM004481.3E-411121IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.79112126IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-613116IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.04E-914126No hitNo description
PROSITE profilePS5129411.525212274IPR017930Myb domain
SuperFamilySSF466892.33E-14217270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-20218271IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-18221271IPR006447Myb domain, plants
PfamPF002492.2E-6222269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAPYNGMINE VRVMLVDHDQ EVIYEMVDLL ESHKYKVTTV GAAEMAMTML SKGKERYDVM  60
IINAYSPDLL STQLLGQAVE LDIISIFVCD DNNPLLAKKA LDVGAYLYLK KPLQEEMVKY  120
LWQFVLKEKL QREKVKKVLE NGENMIINIG DEDETGENVG DEQGEKSMAN DEEQNNNNEV  180
ENSESNGKYK LRKKRGRKST KEANQGDSHS SGKSVKRKVC TEWTLELHAK FLEAVAQLGE  240
GRCYPKEILE LMDVPGLTRM QVASHLQKCR NDNWRAPEER KSSRNSSGQG SSSGSQQRSG  300
HRKFGSMPRI QPNMVTNLQQ QQRDQEINQR SPPEFQFPPL NNSSIIARGE SSTQQEQAYR  360
PQLPYVEPQY LSIGSPFNNP NFTQNSAGGF VQQQQNGPFV GMVGQGQGPI IGGTNYRPGF  420
PINNGPDQHV QNGYNMNVNA AHLGYSGGPM ISDMNGNVTM NGLGFAAAAN ANFQQQYGQP  480
NMTEPSNFVA PSNVSDSEGT DSNDGQNCDQ YFDFNDVDYL FQNLGPPTSN LPNEQGTEFG  540
PVYSDDQVKP SVPFPGIANF PDDLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016467318.10.0PREDICTED: two-component response regulator ORR21-like
TrEMBLA0A1S3ZSN80.0A0A1S3ZSN8_TOBAC; two-component response regulator ORR21-like
STRINGXP_009798262.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.26e-31response regulator 1