PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016466963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28984.9 Da PI: 10.1304 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.5 | 8.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss XP_016466963.1 9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 97.3 | 2.4e-32 | 77 | 172 | 3 | 98 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ +++++ +e+++ e+ kL ++ie +qr++Rh+ G+dL++Lsl+eLq+Leqq++++lk+iRs+Kn+l++e+i+elqkkek+lqe+n++++kk XP_016466963.1 77 ERKLNANDSDPMENWTLEYPKLMSRIELIQRNIRHYTGQDLDPLSLRELQSLEQQIDTALKRIRSRKNQLMHESISELQKKEKALQEQNNSMTKK 171 566677788889*********************************************************************************99 PP K-box 98 l 98 + XP_016466963.1 172 V 172 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.651 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-34 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.86E-40 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 5.5E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-28 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.369 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD ADVALIVFST KGKLFEYSSE 60 SSMENILERY ESYSYAERKL NANDSDPMEN WTLEYPKLMS RIELIQRNIR HYTGQDLDPL 120 SLRELQSLEQ QIDTALKRIR SRKNQLMHES ISELQKKEKA LQEQNNSMTK KVHHLKDKEK 180 MQSGQTQPNS GQNSATFMLP QQPPPQSHQL PNLTIGGPFE ATRVRNTDGG QARYGSNSLV 240 PPWMIRHVNT EG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608611.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X3 | ||||
Refseq | XP_016466963.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
Swissprot | D7SMN6 | 1e-110 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A1S3ZRR4 | 0.0 | A0A1S3ZRR4_TOBAC; truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
STRING | XP_009608611.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-81 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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