PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016463196.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

DBB

Protein Properties

Length: 326aa MW: 36308.8 Da PI: 7.1236

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016463196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.9	3.7e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e++ fC ++ lC++C H+ H+ XP_016463196.1 4 QCDVCNKNEASVFCVADEAALCDSCDHRVHHAnklaekHQ 43 7**************************9964446676676 PP
2	zf-B_box	28.2	3.8e-09	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + + C+ ++e ++ lfC++++ lC++C +++Hk Ht XP_016463196.1 54 QVPLCDICQERRAFLFCQQDRAILCRECDTSIHKAneHT 92 6789*****************************878865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.879	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	8.48E-7	3	47	No hit	No description
SMART	SM00336	3.0E-7	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.7E-16	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.637	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.8E-8	54	92	IPR000315	B-box-type zinc finger
CDD	cd00021	1.24E-11	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MKIQCDVCNK NEASVFCVAD EAALCDSCDH RVHHANKLAE KHQRFSLLQP SPKQVPLCDI 60 CQERRAFLFC QQDRAILCRE CDTSIHKANE HTQKHNRFLL TGVKLSANSA LYSSIESQST 120 TSSTNSLTKN QESAPNLKSQ TSTKKPLPLP VSVSVSSNIS QEMTVAANDK GISCCNNQLV 180 NVGANSLTSS SISEYLEMLP GWHVEEFLNS SNIPNGVCKI GDSDMFPIWD TEIESNLNSF 240 SPESIGIWVP QPPAIATPQQ NQTQIFTPQN FNFGGQIEFK NTQIEFKNTK EVTSIKSSRK 300 WRDDNSFAVP QISPTSTSFK RSRTLW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	5e-54	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016463196.1	0.0	PREDICTED: B-box zinc finger protein 21-like
TrEMBL	A0A1S3ZFX8	0.0	A0A1S3ZFX8_TOBAC; B-box zinc finger protein 21-like
STRING	XP_009605718.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1463	23	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	3e-77	salt tolerance homolog2