PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016462879.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 238aa MW: 26952.5 Da PI: 8.0179

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016462879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.7	1.2e-32	50	105	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k +YkeClkNhA+ +GghavDGCgEfmp+ ge+g+ +alkCaAC+CHRnFHR+e++ XP_016462879.1 50 KPKYKECLKNHAVGIGGHAVDGCGEFMPA-GEDGSLDALKCAACNCHRNFHRKETQI 105 679***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-22	52	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.6E-31	52	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.6E-30	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.787	53	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	6.5E-28	147	221	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-18	153	220	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.2E-24	159	215	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MEFETQEDQK EIRASPNYNS VLEISNSTNE PKMPSNSDEL ILDAPLQMRK PKYKECLKNH 60 AVGIGGHAVD GCGEFMPAGE DGSLDALKCA ACNCHRNFHR KETQIHHPPY YRTPPCGYFQ 120 HVMPPQRPLA LPSTSGGGGG GGYREDQEEM CNPNNSGTKK RFRTRFNQEQ KEKMLELAEN 180 LGWRIQRQDE GVVQQLCNEI GIKRHVFKVW MHNNKLTLGK KTLIQSISPS LFPAQERS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-21	158	215	16	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802157.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like isoform X1
Refseq	XP_016462879.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like isoform X1
Swissprot	Q6YXH5	6e-68	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1S3ZEU9	1e-179	A0A1S3ZEU9_TOBAC; zinc-finger homeodomain protein 2-like isoform X1
TrEMBL	A0A1U7YDF9	1e-179	A0A1U7YDF9_NICSY; zinc-finger homeodomain protein 2-like isoform X1
STRING	XP_009802157.1	1e-180	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-66	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]