PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462837.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 180aa    MW: 21128.4 Da    PI: 10.2174
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n+s rqvtfskRrng+lKKA+EL +LCda+v +iifsst klye+s+
  XP_016462837.1 10 RIDNSSSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTEKLYEFSN 59
                    8***********************************************95 PP
2K-box71.52.5e-2481169997
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +  ++ + +q+e+a L++++++Lq+++R+++Ge+L  L++k+Lq+Le++Le+s++ iR kK+++l+++i+el  k   +++en +L +k
  XP_016462837.1  81 NPVSELKLWQKEAAILRQQLQELQQNHRQVMGEQLYGLTIKDLQNLENRLETSIRGIRMKKEQILHDEIQELSLKGSLMHQENLELFHK 169
                     45677899***************************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.628161IPR002100Transcription factor, MADS-box
CDDcd002652.75E-42278No hitNo description
SuperFamilySSF554555.23E-32290IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2185169IPR002487Transcription factor, K-box
PROSITE profilePS5129712.78186180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSSSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TEKLYEFSNT  60
SMKSVVERYN KTKDEHHQLQ NPVSELKLWQ KEAAILRQQL QELQQNHRQV MGEQLYGLTI  120
KDLQNLENRL ETSIRGIRMK KEQILHDEIQ ELSLKGSLMH QENLELFHKN FSGFWYKGCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-21181181MEF2C
5f28_B6e-21181181MEF2C
5f28_C6e-21181181MEF2C
5f28_D6e-21181181MEF2C
6bz1_A5e-21183183MEF2 CHIMERA
6bz1_B5e-21183183MEF2 CHIMERA
6bz1_C5e-21183183MEF2 CHIMERA
6bz1_D5e-21183183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462837.11e-130PREDICTED: MADS-box transcription factor 23-like isoform X3
SwissprotQ6EP491e-84MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3ZEY31e-128A0A1S3ZEY3_TOBAC; MADS-box transcription factor 23-like isoform X3
STRINGXP_009606375.11e-119(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-79AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]