PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462797.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 371aa    MW: 43311.2 Da    PI: 6.6315
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.62.9e-2299174173
        trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.s 73 
                     +Wt+++v++Li+a+++++e++ ++    kk++W+++s++m+e g ++sp+qC++k+++lnk++k+++++ +++t +
  XP_016462797.1  99 KWTDEMVKLLITAVSYIGEDVWSNGifPKKGKWRAISNAMAESGHHVSPQQCEDKFNDLNKKFKRLNDILGRGTaC 174
                     7*******************99876569******************************************999524 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-2197212No hitNo description
PROSITE profilePS500906.20297158IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MQVNHQQSNS PNQGSGDLQH ALEGAASFGF SNMHDMNQQV LSLDAIETSR LNVYEAYNER  60
SDDVGEVTVR REEKQPVVYR RTRWKMNKEK QPVVYSRMKW TDEMVKLLIT AVSYIGEDVW  120
SNGIFPKKGK WRAISNAMAE SGHHVSPQQC EDKFNDLNKK FKRLNDILGR GTACCVVENP  180
GLMEMMGLTH DVQEEVKKLL SSKQLFYQEM CSYNNQNRLF LPDDRELQRS VLLALKRKDR  240
YEPEYVVQDM PAKRKIAGEE RVSNVVCAFI NSDCNVLNPN SSGIHDSTNN EEAEKLQEQQ  300
IMYRLLQLEE QKLQIQAQIL ELEKQRVKCL RFRRREDREL QELKLENKAM ILENERMELQ  360
LKRCETSLQT E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619564.10.0PREDICTED: uncharacterized protein LOC104111551 isoform X3
RefseqXP_016462791.10.0PREDICTED: uncharacterized protein LOC107785904
RefseqXP_016462792.10.0PREDICTED: uncharacterized protein LOC107785904
RefseqXP_016462793.10.0PREDICTED: uncharacterized protein LOC107785904
RefseqXP_016462794.10.0PREDICTED: uncharacterized protein LOC107785904
RefseqXP_016462795.10.0PREDICTED: uncharacterized protein LOC107785904
RefseqXP_016462796.10.0PREDICTED: uncharacterized protein LOC107785904
RefseqXP_016462797.10.0PREDICTED: uncharacterized protein LOC107785904
RefseqXP_018631617.10.0PREDICTED: uncharacterized protein LOC104111551 isoform X2
RefseqXP_018631618.10.0PREDICTED: uncharacterized protein LOC104111551 isoform X3
RefseqXP_018631619.10.0PREDICTED: uncharacterized protein LOC104111551 isoform X3
RefseqXP_018631620.10.0PREDICTED: uncharacterized protein LOC104111551 isoform X3
TrEMBLA0A1S3ZEC60.0A0A1S3ZEC6_TOBAC; uncharacterized protein LOC107785904
STRINGXP_009619561.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.15e-63