PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462788.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 678aa    MW: 74201.9 Da    PI: 7.2204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07280300526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd C +aHg
  XP_016462788.1 280 PCPEFRK-GACQRGDMCEYAHG 300
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002480.145989IPR002110Ankyrin repeat
SuperFamilySSF484032.33E-1459138IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.06159134IPR020683Ankyrin repeat-containing domain
CDDcd002046.54E-1359134No hitNo description
Gene3DG3DSA:1.25.40.208.5E-1659139IPR020683Ankyrin repeat-containing domain
PfamPF127963.3E-959128IPR020683Ankyrin repeat-containing domain
SMARTSM002481.4E-494126IPR002110Ankyrin repeat
PROSITE profilePS5008811.96894129IPR002110Ankyrin repeat
SMARTSM003562.0E-5275301IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-5280300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568280302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035639310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MNMNNLTVET EDSFVSLLEL AANNDIVAFK RWIEHDLSGI HEVGLWYGRQ KGSRQMVLEH  60
RTPLLVAATY GSIDVLKLIL SLPEIDVNQS CGRDKSTALH CAASGGSPNA VDAVKMLLEA  120
GADPNSEDAN GHRPGDVIVV SPKFHLTESS LESLLKSDTT GKCSLRLSIA TSNSNSPPLS  180
PSPGNRSPSS TSDSTSSPKS AKSDDLPVSS ASEKKEYPID PSLPDIKNSI YSTDEFRMFS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT KCNRRVCFFA HTQEELRPLY VSTGSAVPSP RSNTSAANAM  360
DFAAAMGLIP GSPSSVRVMS PLPFTPPMSP SANGVSNMSW PQPNVPALHL PGSNFQSSRL  420
RSSLHARDIR AVDFNFDMQQ QQQFINEFSC LSQSSVNANS LNRLAHPKTL TPSNLEDLFS  480
AESSSPRYSD QALAQAVFSP THKSAVVNQF QQQQQSMLSP INTKFSPINV DNPLLQASFG  540
VQTPGRMSPR GMEPISPMSS RVSTLSQHEK QQQFRSLSSR DLGSNASAVI GSPVDTWSKW  600
GSSTGNADWA VNTEEFGRLK RSSSFELANN GEEPDLSWVQ SLVKESPQEL KDKTASRVLG  660
LAGSTADLAE DSTSKWSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462787.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_016462788.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3ZEC10.0A0A1S3ZEC1_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009777511.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]