PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462636.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HRT-like
Protein Properties Length: 466aa    MW: 51798.9 Da    PI: 10.4286
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like53.93.1e-17272302131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCGv+l++GsvC r+P+ g+KRC+eHKGm++
  XP_016462636.1 272 ICGVALGHGSVCIRPPITGNKRCAEHKGMKV 302
                     8****************************97 PP
2HRT-like39.78e-13349375228
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                     CG++l +Gs+C+r+  +g+KRC++HKG
  XP_016462636.1 349 CGATLLNGSFCRRKLSEGNKRCWQHKG 375
                     *************************** PP
3HRT-like46.18e-15393419228
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                     CG++l +Gs+C+r+P +g+KRC++HKG
  XP_016462636.1 393 CGATLLNGSFCRRKPSEGNKRCWQHKG 419
                     **************************9 PP
4HRT-like48.12e-15437465230
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                     CG++l +Gs+C+r+P +g+KRC++HKG++
  XP_016462636.1 437 CGATLLNGSFCRRKPSEGNKRCWQHKGRK 465
                     ***************************87 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEATNRSVTV RLNREECKRT KHDSAFSDWK ILIGPNDWTN YLLRKEGAEK YRTQNLPNCT  60
SCSGVYELGI AVSRRQAGRE ASRLDPDYIV PVYVGKSDSV RTRLQRYGRE GAHLENGCSN  120
SALHDQVNVS ASKRAGLFTE AFSRGFSIVY RWAPVNDNKD AEKTEAQLLD RFDYAWNKGS  180
NGVRRHNDVL RKLDGISRAT RLPAFVRKLQ LSLEKQKGVR IQACKPLLLE NRDDFHDTFK  240
STYFLPEIVK FGRSQPRIVS LSSRVNNDPN NICGVALGHG SVCIRPPITG NKRCAEHKGM  300
KVNGVEHKGM SVKKPISKQL GAEIPGVFAG PATKISSEKM HWNIDIPACG ATLLNGSFCR  360
RKLSEGNKRC WQHKGAEIPS VFAGPSVNHS PACGATLLNG SFCRRKPSEG NKRCWQHKGA  420
DIPSVFAGPS VNHSPACGAT LLNGSFCRRK PSEGNKRCWQ HKGRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779863.10.0PREDICTED: uncharacterized protein LOC104228997
RefseqXP_016462636.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A1S3ZEC20.0A0A1S3ZEC2_TOBAC; protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A1U7WMQ50.0A0A1U7WMQ5_NICSY; uncharacterized protein LOC104228997
STRINGXP_009779863.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77412330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.19e-96effector of transcription2