PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016461801.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 199aa MW: 22799.4 Da PI: 8.2084

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016461801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	178.5	3.1e-55	11	147	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 +++CqdCGnqakkdC + RCRtCCks+gf+C+thvkstW+p+++rr r++ l++ +++++++ ++l+ + + ++ +l+ XP_016461801.1 11 SNSRCQDCGNQAKKDCPYLRCRTCCKSQGFQCQTHVKSTWIPVSRRRPRHHLLHTIQQQQQQQ---------KQLQVNPKRYRENDNLAA----- 91 6789*******************************************99998876555433.........222223333333333333..... PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e ++ P+evs +avfrcvrvss d+ +++aYqt+v+i+GhvfkGiLydqG+e+ XP_016461801.1 92 GGEEEDVPTEVSLPAVFRCVRVSSTDNVVDQYAYQTSVNIAGHVFKGILYDQGPET 147 3456789*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.6E-59	13	146	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-26	15	56	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-24	98	145	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MMMMREEGIS SNSRCQDCGN QAKKDCPYLR CRTCCKSQGF QCQTHVKSTW IPVSRRRPRH 60 HLLHTIQQQQ QQQKQLQVNP KRYRENDNLA AGGEEEDVPT EVSLPAVFRC VRVSSTDNVV 120 DQYAYQTSVN IAGHVFKGIL YDQGPETETH YNNMARESSS NGFQQEQLTT NLTPPPPSYP 180 SPFNNFMPGT QFFQYPKSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016461801.1	1e-150	PREDICTED: protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9LQZ5	2e-54	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A1S3ZBL6	1e-148	A0A1S3ZBL6_TOBAC; protein SHI RELATED SEQUENCE 3-like
STRING	XP_009607768.1	1e-148	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-48	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]