PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461631.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 465aa    MW: 50463.1 Da    PI: 4.6926
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461631.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573117.38.7e-3797197197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                     klfqrlw++eDei lLqG++++++++g     s ++d++afy+++k++++++++k+qlveK+rrLKkK+++ ++k++sgk+++f+++hdq +fe+
  XP_016461631.1  97 KLFQRLWTDEDEIELLQGFLEYTTQRGGinssSHHHDTTAFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKMASGKDFVFKSSHDQATFEI 191
                     579***********************9877644555*********************************************************** PP

          DUF573  92 skkiWg 97 
                     s+kiW 
  XP_016461631.1 192 SRKIWS 197
                     *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.0E-3499197IPR007592Protein of unknown function DUF573
SuperFamilySSF474735.74E-7428463IPR011992EF-hand domain pair
Gene3DG3DSA:1.10.238.102.9E-12429461IPR011992EF-hand domain pair
CDDcd000517.05E-6431463No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MASVEDQHNN PVYNDDDLDD DVVDEEDDDV DVDDDDDEDS TSSPPVPAPA PIDQQTVTIA  60
VVGVPAQRIN EFAAVTPPPA ATIVQEKKPS AIDDSRKLFQ RLWTDEDEIE LLQGFLEYTT  120
QRGGINSSSH HHDTTAFYDQ IKSKLQLDFN KNQLVEKLRR LKKKYRNVMS KMASGKDFVF  180
KSSHDQATFE ISRKIWSNAV PVVIRGGGSA AAAAPPPPPP PEDGGFDDED SHLNLNANFV  240
DHSHNGTKTP RSRKRSRGGA VKVEEKHGFI QHYYLPSPSG GGTNMSSPAP APAPAPAHAP  300
APAPAPGFTP FPMTAPQATA PPTTTAAVAA ATASIPSLIE ETVKSCLSPI FKELLNNVTN  360
LSGSRSFAFG TALSPIPLGF GSSGAMNSDM MADEKWRKQQ MLELEVYSRR LELVQDQIKA  420
QLEELRSMSS SITTKELGTV MRALGQNPTE AELQDMISKV DADQH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0106454e-37AJ010645.1 Capsicum annuum mRNA for calmodulin 3.
GenBankAJ3185224e-37AJ318522.1 Solanum commersonii mRNA for putative calmodulin (caM5 gene).
GenBankGU0145784e-37GU014578.1 Solanum tuberosum cultivar Taedong Valley calmodulin isoform 1 (CaM1) mRNA, complete cds.
GenBankHG9754424e-37HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755154e-37HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
GenBankPETRCAM72A4e-37M80832.1 Petunia hybrida calmodulin (CAM72) mRNA, complete cds.
GenBankTOMCALM1LE4e-37M67472.1 Tomato (L.esculentum) calmodulin mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461631.10.0PREDICTED: uncharacterized protein LOC107784943
TrEMBLA0A1S3ZB350.0A0A1S3ZB35_TOBAC; uncharacterized protein LOC107784943
STRINGXP_009587104.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.26e-53DNA-binding storekeeper protein-related transcriptional regulator