PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016461218.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 443aa MW: 48429.3 Da PI: 8.6853

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016461218.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	20	64	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a+k++G W++I +++g ++t+ q++s+ qk+ XP_016461218.1 20 RERWTEEEHRKFLEAIKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 64 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-16	14	68	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.437	15	69	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-17	18	67	IPR006447	Myb domain, plants
SMART	SM00717	1.2E-13	19	67	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-10	20	60	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-14	20	63	IPR001005	SANT/Myb domain
CDD	cd00167	6.52E-11	22	65	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MASAEMADQA RKAYTISKQR ERWTEEEHRK FLEAIKLYGR AWRRIEEHVG TKTAVQIRSH 60 AQKFFSKVVR ESNSGDASSV KPIEIPPPRP KRKPMHPYPR KLATPVKSGT LVPEKLTRSI 120 SPNMSMSEQE NQSPTSVLSA HGSDALGTGD SSKRSGSASP VSSAGGGNSD GFVLSEPPNF 180 ILQDSSTPAQ ANASTNPENQ ACVKLELLPQ EGSAETSSTP CLKLFGKTVL VTESQRPCPT 240 SGTCKIETDV NDEAALPTAS WNIMPMKFTA SDSDCVSSTL TMGTPPPFYY LPSQNENQWP 300 TRCASATLLP WGSSCASVSF PCIQVLNPIP IKGRPIFNDN NLEDKQNQKE GSSTGSNTEP 360 VSTEMSGDKN MDVEAQSSQH PLEKVRKELS SRPSETSSLV RRASSTKRIK GFVPYKRCLA 420 ERGTNSSRLS GEEREEQRTR LCM

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MASAEMADQA RKAYTISKQR ERWTEEEHRK FLEAIKLYGR AWRRIEEHVG TKTAVQIRSH  60
AQKFFSKVVR ESNSGDASSV KPIEIPPPRP KRKPMHPYPR KLATPVKSGT LVPEKLTRSI  120
SPNMSMSEQE NQSPTSVLSA HGSDALGTGD SSKRSGSASP VSSAGGGNSD GFVLSEPPNF  180
ILQDSSTPAQ ANASTNPENQ ACVKLELLPQ EGSAETSSTP CLKLFGKTVL VTESQRPCPT  240
SGTCKIETDV NDEAALPTAS WNIMPMKFTA SDSDCVSSTL TMGTPPPFYY LPSQNENQWP  300
TRCASATLLP WGSSCASVSF PCIQVLNPIP IKGRPIFNDN NLEDKQNQKE GSSTGSNTEP  360
VSTEMSGDKN MDVEAQSSQH PLEKVRKELS SRPSETSSLV RRASSTKRIK GFVPYKRCLA  420
ERGTNSSRLS GEEREEQRTR LCM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016461218.1	0.0	PREDICTED: protein REVEILLE 1-like isoform X3
TrEMBL	A0A1S3ZA13	0.0	A0A1S3ZA13_TOBAC; protein REVEILLE 1-like isoform X3
STRING	XP_009613640.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-49	MYB_related family protein