PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016461217.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 478aa MW: 52080.1 Da PI: 8.404 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.7e-16 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a+k++G W++I +++g ++t+ q++s+ qk+ XP_016461217.1 55 RERWTEEEHRKFLEAIKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 99 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-16 | 49 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.437 | 50 | 104 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.4E-17 | 53 | 102 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.2E-13 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-14 | 55 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-10 | 55 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.61E-11 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MASAEMADQD QSGESGVDSI RSSWNGISSD VGASSTRSIQ LKEQARKAYT ISKQRERWTE 60 EEHRKFLEAI KLYGRAWRRI EEHVGTKTAV QIRSHAQKFF SKVVRESNSG DASSVKPIEI 120 PPPRPKRKPM HPYPRKLATP VKSGTLVPEK LTRSISPNMS MSEQENQSPT SVLSAHGSDA 180 LGTGDSSKRS GSASPVSSAG GGNSDGFVLS EPPNFILQDS STPAQANAST NPENQACVKL 240 ELLPQEGSAE TSSTPCLKLF GKTVLVTESQ RPCPTSGTCK IETDVNDEAA LPTASWNIMP 300 MKFTASDSDC VSSTLTMGTP PPFYYLPSQN ENQWPTRCAS ATLLPWGSSC ASVSFPCIQV 360 LNPIPIKGRP IFNDNNLEDK QNQKEGSSTG SNTEPVSTEM SGDKNMDVEA QSSQHPLEKV 420 RKELSSRPSE TSSLVRRASS TKRIKGFVPY KRCLAERGTN SSRLSGEERE EQRTRLCM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613641.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X3 | ||||
Refseq | XP_016461217.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X2 | ||||
TrEMBL | A0A1S3ZAG5 | 0.0 | A0A1S3ZAG5_TOBAC; protein REVEILLE 1-like isoform X2 | ||||
STRING | XP_009613640.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 8e-49 | MYB_related family protein |