PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460563.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 819aa    MW: 90350.3 Da    PI: 6.7698
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-0885127347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
   XP_016460563.1  85 AWTSQEEESFFSALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 127
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.49E-1080132IPR009057Homeodomain-like
PROSITE profilePS5129313.31781132IPR017884SANT domain
SMARTSM007175.3E-682130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-584130IPR009057Homeodomain-like
PfamPF002492.7E-685127IPR001005SANT/Myb domain
CDDcd001671.69E-585128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MQMEPQVALE CDRCLHPETL MCKDGVSDVT QHPAAAQPVI PSEDHPVSQL SVPTHDHAVT  60
QQVSSSQDRV TLQKPAKRQT RQWAAWTSQE EESFFSALRQ VGKNFEKITS RVQSKNKDQV  120
RHYYYRLVRR MNKLLGPELC LDAKNSKDTN AAMLRWWSLL EKSSCKASKL HLKPRRFKIF  180
IETLESQLLK DRKKNVRRRP SQGESSSTAA ASLSSHSRVS TNDSRTVKVV LLDDQGIQKF  240
GSGKGSSLKR HVTMGVNRSN AKVDSSPVKN ARHRRKIGSV SAAAYKRWEK AAIAGVSLVA  300
DAAEHLERAT IGKDVELVQN SQGINGFEHV GKDVHSLLTL SQNLLNETNL QSCMKLKLQL  360
FPVDEGTRRA LEMDNHNPYL ELTLSNRKKM SSVLEHLNRK WGSSSIATGE LVLFPYHVQM  420
ENLVQSLRWT KDTTLSAADV NNLIGSPPVF RLRYGWFPNS ELGTFQAPLS STTPFTQNTN  480
TNITEEMNAE ILASSHGKLV RFSKEPLVSN PRMTVTSSST ELSGESNLQA SMGLNTYNSD  540
HNETLPSHRR EKGAITTEKQ VEMGSKTSAL SAGDWEDSLT NISVGDLLSD APDDEETDCI  600
ESTLPGSSHF LQQMPFSCDS FDAAIAAHIY KHQSKAESQM ALPPQASSIW NAEDTCDAFA  660
FQKDVASRLK AHNSSSNVGA ENCQHISQSS SLLLDAGIKD LPGKMEPITD EPAHEDPVDE  720
CQSNAQALGG STKDLSLLSD IYWPDSLGPL ELDAPSCRYH SEDLILSDNS LGGLNRLIAS  780
SLDAFQNCSF FGLDKKEPGS TVEAVETTSL ADYKIGAKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476041e-129EF647604.1 Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence.
GenBankHG9755211e-129HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460563.10.0PREDICTED: TSL-kinase interacting protein 1-like isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A1S3Z8340.0A0A1S3Z834_TOBAC; TSL-kinase interacting protein 1-like isoform X2
STRINGXP_009610182.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1