PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460453.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 369aa    MW: 40853.4 Da    PI: 4.7212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-2092142155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr+p   + r  r +lg+fgta eAa a+++a+++++g
  XP_016460453.1  92 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFGTAIEAALAYDEAARAMYG 142
                     56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-1492142IPR001471AP2/ERF domain
CDDcd000181.49E-3192151No hitNo description
PROSITE profilePS5103221.1893150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-3193151IPR001471AP2/ERF domain
SMARTSM003803.5E-3793156IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2093150IPR016177DNA-binding domain
PRINTSPR003671.7E-994105IPR001471AP2/ERF domain
PRINTSPR003671.7E-9116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MPSDYSERNQ KMAILDQAPK MTSLPLDCSR KRKSRSRRDG TKNVEETLAK WKEYNQKLDC  60
VDDEGKTVRK VPAKGSKKGC MKGKGGPENS RCNYRGVRQR TWGKWVAEIR EPNRGSRLWL  120
GTFGTAIEAA LAYDEAARAM YGPSARLNLP NYPSSKESSK DDSSWATTSA SDSTAGSSLS  180
EVCPAAEQKG ISEIKFEDGE GESRIDGVTT AIHEVSTPLT SEKHEAKSKM GVVEAKEEPR  240
SIESINQDML KSGRDYLDNL NWDELFDVEE LLGMLDSIPA GAPAFMQDFG SIAGQKEQYD  300
AYNNNQLSNS SFQHQNADLK LLGGTQQMEQ QAPIAVDYGF DFLKPGREED LNFSLDDLAL  360
MDLDSELGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-1793150260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833SRKRKS
23138RKSRSRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612863.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
RefseqXP_016460453.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA0A1S3Z7S50.0A0A1S3Z7S5_TOBAC; dehydration-responsive element-binding protein 2C-like
STRINGXP_009612863.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-37ERF family protein