PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016460318.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 149aa MW: 16660.2 Da PI: 7.679

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016460318.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	94.3	3e-29	9	87	5	83
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlk 83 sse+vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvn+ q l+ ++ +++ + ++ e+ ++ + + XP_016460318.1 9 PSSERVCYVHCNFCNTMLAVSVPCNSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQDLQQQRQQSSIIEDASKACGSSS 87 689****************************************************996555555556655544333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-30	10	107	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MSLDITYSPS SERVCYVHCN FCNTMLAVSV PCNSMMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQDLQQQR QQSSIIEDAS KACGSSSSTN YHRFSAIATT PEDDQPRTMP IRRKLSFSLS 120 ISFDLMLYIY FLCLPCRANV THQHIYLPA

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667765	6e-58	KJ667765.1 Solanum melongena YAB2 protein mRNA, partial cds.
GenBank	KJ667768	6e-58	KJ667768.1 Solanum aethiopicum YAB2 protein mRNA, partial cds.
GenBank	KJ667770	6e-58	KJ667770.1 Solanum torvum YAB2 protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016460318.1	1e-106	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	7e-24	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1S3Z7D4	1e-105	A0A1S3Z7D4_TOBAC; putative axial regulator YABBY 2 isoform X2
STRING	XP_009611997.1	6e-66	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-21	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]