PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459653.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 297aa    MW: 34233.6 Da    PI: 8.1555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.6e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+ Ed+ll d++k++G   W++ + + g+ R++k+c++rw +yl
   XP_016459653.1 14 KGTWTAKEDKLLTDYIKEHGEVGWRSLPVKAGLLRCGKSCRLRWVNYL 61
                     799*****************99**********99************97 PP
2Myb_DNA-binding55.51.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++TteE++l+v++ ++lG++ W++Ia +++ gRt++++k++w+++l
   XP_016459653.1  67 RGNFTTEEEDLIVRLYNLLGSR-WSLIAGRIP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.819961IPR017930Myb domain
SuperFamilySSF466898.44E-2711108IPR009057Homeodomain-like
SMARTSM007172.7E-101363IPR001005SANT/Myb domain
PfamPF002499.9E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-201568IPR009057Homeodomain-like
CDDcd001671.72E-61661No hitNo description
PROSITE profilePS5129423.11362116IPR017930Myb domain
SMARTSM007178.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2469117IPR009057Homeodomain-like
CDDcd001672.20E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRKPCCSKE GLRKGTWTAK EDKLLTDYIK EHGEVGWRSL PVKAGLLRCG KSCRLRWVNY  60
LKPGIKRGNF TTEEEDLIVR LYNLLGSRWS LIAGRIPGRT DNEIKNYWNT HLLKKLKSEG  120
VEPKIHKSLA KHTKRQKEKA NVSSQINQKG YKENKKRNKK GKIEENCNNI EDKEQVAKKT  180
EEQCRNQDSV RVMSANNHDI TCSSSSAGST SEKETNCNNV HCSSSAQNLE ENDNEIYEKL  240
QVIDELLLND NCLLPTECRE FNSESQMLLM EFYEEYFQLV SENSCHFQDY AHSDLGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A4e-23141402123MYB3
3zqc_D4e-23141402123MYB3
3zqc_G4e-23141402123MYB3
3zqc_J4e-23141402123MYB3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765022.10.0PREDICTED: myb-related protein 308-like
RefseqXP_016459653.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A1S3Z5H30.0A0A1S3Z5H3_TOBAC; myb-related protein 308-like
TrEMBLA0A1U7VAG80.0A0A1U7VAG8_NICSY; myb-related protein 308-like
STRINGXP_009765022.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-63myb domain protein 6